RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 BCRP11274 1271 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 ELNP15502 786 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 INPP5BP32019 993 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 BMP8BP34820 402 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 FCGRTP55899 365 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 FOXO4P98177 505 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 MOGSQ13724 837 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 MIGA2Q7L4E1 593 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 PAWRQ96IZ0 340 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 ZNF594Q96JF6 807 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 FAM84BQ96KN1 310 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 STK31Q9BXU1 1019 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 MTMR10Q9NXD2 777 aa9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 ZMYND8Q9ULU4 1186 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-204ENST00000446625 APAF1O14727 1248 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 SLC4A2P04920 1241 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 INHAP05111 366 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 CYP2C8P10632 490 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 HIBADHP31937 336 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 FLT3LGP49771 235 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 CALD1Q05682 793 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 DCAF15Q66K64 600 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 FAM83AQ86UY5 434 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 DIS3LQ8TF46 1054 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 ZNF341Q9BYN7 854 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 CRISPLD2Q9H0B8 497 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 MYH16Q9H6N6 1097 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 KCNH4Q9UQ05 1017 aa9.9□□□□□ -0.82
LIMCH1-204ENST00000446625 PTPRFP10586 1907 aa9.9□□□□□ -0.83
LIMCH1-204ENST00000446625 MYBBP1AQ9BQG0 1328 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 VCANP13611 3396 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 BCAMP50895 628 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 HDLBPQ00341 1268 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 LRIT3Q3SXY7 679 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 GPAT2Q6NUI2 795 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 LMBR1LQ6UX01 489 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 LDHAL6AQ6ZMR3 332 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 NECAB2Q7Z6G3 386 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 C7orf61Q8IZ16 206 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 LINS1Q8NG48 757 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 DNAAF4Q8WXU2 420 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 HOOK2Q96ED9 719 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 PARK7Q99497 189 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 PAK6Q9NQU5 681 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 CNNM1Q9NRU3 951 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 TMOD2Q9NZR1 351 aa9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 IQSEC3Q9UPP2 1182 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-204ENST00000446625 CAPN2P17655 700 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 MAGEA10P43363 369 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 FLIIQ13045 1269 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 CHAF1AQ13111 956 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 UBE4AQ14139 1066 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 EPHA10Q5JZY3 1008 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 FKBP1CQ5VVH2 108 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 APOBEC3HQ6NTF7 200 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 PXYLP1Q8TE99 480 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 TSR2Q969E8 191 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 TEKT1Q969V4 418 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 ZDHHC15Q96MV8 337 aa9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 RPAP1Q9BWH6 1393 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-204ENST00000446625 DDX60LQ5H9U9 1706 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 SYN1P17600 705 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 FKBP5Q13451 457 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 IRF5Q13568 498 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 CCDC57Q2TAC2 916 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 TAF7LQ5H9L4 462 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 TDHQ8IZJ6 230 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 ZNF112Q9UJU3 913 aa9.87□□□□□ -0.83
LIMCH1-204ENST00000446625 MYH13Q9UKX3 1938 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 CXCL11O14625 94 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 TNPO2O14787 897 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 TWISTNBQ3B726 338 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 FBXO33Q7Z6M2 555 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 TBC1D22AQ8WUA7 517 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 MRIQ9BWK5 157 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 PUS3Q9BZE2 481 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 TAOK2Q9UL54 1235 aa9.86□□□□□ -0.83
LIMCH1-204ENST00000446625 NCOR1O75376 2440 aa9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 PHIPQ8WWQ0 1821 aa9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 TCP10Q12799 353 aa9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 NOL9Q5SY16 702 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 VPS37DQ86XT2 251 aa9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 FAM151AQ8WW52 585 aa9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 UBE2OQ9C0C9 1292 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 LAMA2P24043 3122 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-204ENST00000446625 RPTORQ8N122 1335 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 PRUNE2Q8WUY3 3088 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 A0A0G2JLL6 359 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 F6X3S4 739 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 FRAT2O75474 233 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 HHIPL2Q6UWX4 724 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 FASTKD5Q7L8L6 764 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 PRRT2Q7Z6L0 340 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 ANKLE1Q8NAG6 615 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 GUCD1Q96NT3 240 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 NBPF3Q9H094 633 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 ZHX2Q9Y6X8 837 aa9.84□□□□□ -0.83
LIMCH1-204ENST00000446625 DOCK2Q92608 1830 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms