RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 PTMAP06454 111 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 LDHCP07864 332 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 U2AF1L5P0DN76 240 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ZSCAN20P17040 1043 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FSHRP23945 695 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CASP2P42575 452 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 IDH3AP50213 366 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 U2AF1Q01081 240 aaKnown RBP eCLIP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 LMNB2Q03252 620 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 GRIN2CQ14957 1233 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 C1orf53Q5VUE5 145 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TTBK2Q6IQ55 1244 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 SV2BQ7L1I2 683 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 DGKHQ86XP1 1220 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM178BQ8IXR5 827 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 LRRC47Q8N1G4 583 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ST13P5Q8NFI4 369 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CHMP4CQ96CF2 233 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 NIFKQ9BYG3 293 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 MIR1-1HGQ9H1L0 117 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 GPN3Q9UHW5 284 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FBXO2Q9UK22 296 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 HDAC9Q9UKV0 1011 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 MAPRE3Q9UPY8 281 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM153BP0C7A2 387 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CRKP46108 304 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 GIPRP48546 466 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 WNT7BP56706 349 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TMPRSS15P98073 1019 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 EFCAB2Q5VUJ9 269 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 SPATA31D1Q6ZQQ2 1576 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 STK11IPQ8N1F8 1099 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CXorf38Q8TB03 319 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 JPH3Q8WXH2 748 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 USP7Q93009 1102 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 PPP1R14AQ96A00 147 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 NLRP3Q96P20 1036 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 SELENOOQ9BVL4 669 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 RUSC1Q9BVN2 902 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ASPSCR1Q9BZE9 553 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CCDC8Q9H0W5 538 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TNKS2Q9H2K2 1166 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ARHGAP33O14559 1287 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 EREGO14944 169 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 EPB41L2O43491 1005 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TIMM44O43615 452 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 RAPGEF3O95398 923 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 EDN3P14138 238 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 KCTD2Q14681 263 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CBX2Q14781 532 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TEAD4Q15561 434 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ARHGAP29Q52LW3 1261 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM102BQ5T8I3 360 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM196AQ6ZSG2 479 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 GALNT12Q8IXK2 581 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 AHI1Q8N157 1196 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ZNF784Q8NCA9 323 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 PMEPA1Q969W9 287 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 GPR101Q96P66 508 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 SPATA9Q9BWV2 254 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 IRX2Q9BZI1 471 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CDH19Q9H159 772 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ANKIB1Q9P2G1 1089 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 USP3Q9Y6I4 520 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 PHF20L1A8MW92 1017 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 SNUPNO95149 360 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 F2P00734 622 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CELA3AP09093 270 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 EPB42P16452 691 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ARSDP51689 593 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 PURAQ00577 322 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CHAF1AQ13111 956 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 MORC3Q14149 939 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 MTFR1Q15390 333 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 ACBD5Q5T8D3 534 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 CC2D1AQ6P1N0 951 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 MORC1Q86VD1 984 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 SLITRK4Q8IW52 837 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TRMT44Q8IYL2 757 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 TARS2Q9BW92 718 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 LRP2BPQ9P2M1 347 aa2.87□□□□□ -1.95
CCDC88A-208ENST00000444458 KAT6BQ8WYB5 2073 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 MEN1O00255 615 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 GEMIN4P57678 1058 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 MTMR1Q13613 665 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 AKAP4Q5JQC9 854 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 RNF219Q5W0B1 726 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ICE2Q659A1 982 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM43BQ6ZT52 329 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 SPICE1Q8N0Z3 855 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 MAGEB6Q8N7X4 407 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 RHOVQ96L33 236 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 LRGUKQ96M69 825 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 C1QTNF2Q9BXJ5 285 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 XPO5Q9HAV4 1204 aaKnown RBP eCLIP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 EVLQ9UI08 416 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 AXIN2Q9Y2T1 843 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 RTCBQ9Y3I0 505 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ROBO2Q9HCK4 1378 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 A0A087X0B3 334 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms