RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 NBPF12Q5TAG4 269 aaPredicted RBP22.75■■□□□ 1.23
SHH-204ENST00000441114 CYP4F22Q6NT55 531 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 TMEM39BQ9GZU3 492 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 BOLA2Q9H3K6 86 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 ZBTB47Q9UFB7 747 aaPredicted RBP22.75■■□□□ 1.23
SHH-204ENST00000441114 FZD1Q9UP38 647 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 MAST2Q6P0Q8 1798 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 GAKO14976 1311 aa22.75■■□□□ 1.23
SHH-204ENST00000441114 PAPPA2Q9BXP8 1791 aa22.74■■□□□ 1.23
SHH-204ENST00000441114 IDH1O75874 414 aaKnown RBP22.74■■□□□ 1.23
SHH-204ENST00000441114 ANKRD45Q5TZF3 282 aa22.74■■□□□ 1.23
SHH-204ENST00000441114 NAA16Q6N069 864 aaPredicted RBP22.74■■□□□ 1.23
SHH-204ENST00000441114 RWDD1Q9H446 243 aaPredicted RBP22.74■■□□□ 1.23
SHH-204ENST00000441114 UBE2Q2LH0YL09 131 aa22.73■■□□□ 1.23
SHH-204ENST00000441114 TCP10Q12799 353 aa22.73■■□□□ 1.23
SHH-204ENST00000441114 SUPT20HL1Q3ZLR7 823 aa22.73■■□□□ 1.23
SHH-204ENST00000441114 FAM163AQ96GL9 167 aaPredicted RBP22.73■■□□□ 1.23
SHH-204ENST00000441114 CAPNS2Q96L46 248 aa22.73■■□□□ 1.23
SHH-204ENST00000441114 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.73■■□□□ 1.23
SHH-204ENST00000441114 GOLIM4O00461 696 aa22.72■■□□□ 1.23
SHH-204ENST00000441114 ATP5JP18859 108 aa22.72■■□□□ 1.23
SHH-204ENST00000441114 CDAN1Q8IWY9 1227 aa22.72■■□□□ 1.23
SHH-204ENST00000441114 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.72■■□□□ 1.23
SHH-204ENST00000441114 GCC1Q96CN9 775 aa22.72■■□□□ 1.23
SHH-204ENST00000441114 ANGEL1Q9UNK9 670 aaKnown RBP22.72■■□□□ 1.23
SHH-204ENST00000441114 DOCK2Q92608 1830 aa22.72■■□□□ 1.23
SHH-204ENST00000441114 WDR33Q9C0J8 1336 aaKnown RBP22.72■■□□□ 1.23
SHH-204ENST00000441114 GPR75-ASB3A0A0A6YYF3 556 aa22.71■■□□□ 1.23
SHH-204ENST00000441114 IGHDP01880 384 aa22.71■■□□□ 1.23
SHH-204ENST00000441114 ECE1P42892 770 aa22.71■■□□□ 1.23
SHH-204ENST00000441114 NFIAQ12857 509 aa22.71■■□□□ 1.23
SHH-204ENST00000441114 ARMC9Q7Z3E5 817 aa22.71■■□□□ 1.23
SHH-204ENST00000441114 EDC3Q96F86 508 aaKnown RBP22.71■■□□□ 1.23
SHH-204ENST00000441114 NOL10Q9BSC4 688 aaKnown RBP22.71■■□□□ 1.23
SHH-204ENST00000441114 FKBP1BP68106 108 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 TTF1Q15361 905 aaPredicted RBP22.7■■□□□ 1.22
SHH-204ENST00000441114 FKBP1CQ5VVH2 108 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 TSHZ3Q63HK5 1081 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 RGMBQ6NW40 437 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 FAM83AQ86UY5 434 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 MAGEB6Q8N7X4 407 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 GPATCH3Q96I76 525 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 TEPSINQ96N21 525 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 ECHDC1Q9NTX5 307 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 SSC5DA1L4H1 1573 aa22.7■■□□□ 1.22
SHH-204ENST00000441114 CYP7A1P22680 504 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 ZNF157P51786 506 aaPredicted RBP22.69■■□□□ 1.22
SHH-204ENST00000441114 MAP3K12Q12852 859 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 PICALMQ13492 652 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 B4GALNT3Q6L9W6 998 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 HHIPL1Q96JK4 782 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 AATFQ9NY61 560 aaKnown RBP eCLIP22.69■■□□□ 1.22
SHH-204ENST00000441114 FAM198AQ9UFP1 575 aa22.69■■□□□ 1.22
SHH-204ENST00000441114 CEP350Q5VT06 3117 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 PPP1R12BO60237 982 aaPredicted RBP22.68■■□□□ 1.22
SHH-204ENST00000441114 AOC2O75106 756 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 RGS3P49796 1198 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 ADGRA1Q86SQ6 560 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 OTUD7AQ8TE49 926 aaPredicted RBP22.68■■□□□ 1.22
SHH-204ENST00000441114 FAM151AQ8WW52 585 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 HAUS7Q99871 368 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 PAG1Q9NWQ8 432 aa22.68■■□□□ 1.22
SHH-204ENST00000441114 ZFPM1Q8IX07 1006 aa22.67■■□□□ 1.22
SHH-204ENST00000441114 JMYQ8N9B5 988 aa22.67■■□□□ 1.22
SHH-204ENST00000441114 USP2O75604 605 aaPredicted RBP22.66■■□□□ 1.22
SHH-204ENST00000441114 BAG3O95817 575 aa22.66■■□□□ 1.22
SHH-204ENST00000441114 RHBDL3P58872 404 aa22.66■■□□□ 1.22
SHH-204ENST00000441114 SH3RF3Q8TEJ3 882 aaPredicted RBP22.66■■□□□ 1.22
SHH-204ENST00000441114 WDHD1O75717 1129 aaPredicted RBP22.65■■□□□ 1.22
SHH-204ENST00000441114 DYNLL1P63167 89 aaKnown RBP22.65■■□□□ 1.22
SHH-204ENST00000441114 SLC9C2Q5TAH2 1124 aa22.65■■□□□ 1.22
SHH-204ENST00000441114 ZSCAN29Q8IWY8 852 aaPredicted RBP22.65■■□□□ 1.22
SHH-204ENST00000441114 TEX11Q8IYF3 940 aa22.65■■□□□ 1.22
SHH-204ENST00000441114 MIGA1Q8NAN2 632 aa22.65■■□□□ 1.22
SHH-204ENST00000441114 IDI2Q9BXS1 227 aa22.65■■□□□ 1.22
SHH-204ENST00000441114 DDX4Q9NQI0 724 aaKnown RBP22.65■■□□□ 1.22
SHH-204ENST00000441114 IGSF3O75054 1194 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 ENTPD3O75355 529 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 IREB2P48200 963 aaKnown RBP22.64■■□□□ 1.21
SHH-204ENST00000441114 SMC5Q8IY18 1101 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 CCDC102AQ96A19 550 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 LNPKQ9C0E8 428 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 MYH7P12883 1935 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 CDK5RAP2Q96SN8 1893 aa22.64■■□□□ 1.21
SHH-204ENST00000441114 MAP4K4O95819 1239 aaPredicted RBP22.63■■□□□ 1.21
SHH-204ENST00000441114 PDE6AP16499 860 aa22.63■■□□□ 1.21
SHH-204ENST00000441114 MIGA2Q7L4E1 593 aa22.63■■□□□ 1.21
SHH-204ENST00000441114 PLCG2P16885 1265 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 MX1P20591 662 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 PPP4CP60510 307 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 LDLRAD1Q5T700 205 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 RASAL3Q86YV0 1011 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 HOOK2Q96ED9 719 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 CLMNQ96JQ2 1002 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 RFX7Q2KHR2 1363 aa22.62■■□□□ 1.21
SHH-204ENST00000441114 RPAP1Q9BWH6 1393 aaPredicted RBP22.62■■□□□ 1.21
SHH-204ENST00000441114 OTOFQ9HC10 1997 aa22.61■■□□□ 1.21
SHH-204ENST00000441114 TTC41PQ6P2S7 1318 aa22.61■■□□□ 1.21
SHH-204ENST00000441114 ZNF532Q9HCE3 1301 aa22.61■■□□□ 1.21
SHH-204ENST00000441114 FAM155AB1AL88 458 aaPredicted RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms