RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 AKNAD1Q5T1N1 836 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 KRI1Q8N9T8 703 aaKnown RBP14.03□□□□□ -0.16
TCOF1-205ENST00000439160 CNKSR2Q8WXI2 1034 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 ERCC4Q92889 916 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-205ENST00000439160 BRD1O95696 1058 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 PARP1P09874 1014 aaKnown RBP14.03□□□□□ -0.16
TCOF1-205ENST00000439160 STX17P56962 302 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 KIF4BQ2VIQ3 1234 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 NBPF14Q5TI25 921 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 VWA3AA6NCI4 1184 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 PATL2C9JE40 543 aaKnown RBP14.03□□□□□ -0.16
TCOF1-205ENST00000439160 NEMFO60524 1076 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 ASIC1P78348 528 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 EPHA10Q5JZY3 1008 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 ZNF589Q86UQ0 364 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-205ENST00000439160 TGFBRAP1Q8WUH2 860 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 ZSWIM6Q9HCJ5 1215 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 GPCPD1Q9NPB8 672 aa14.03□□□□□ -0.16
TCOF1-205ENST00000439160 YEATS4O95619 227 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 GNA11P29992 359 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 PPP4R3BQ5MIZ7 849 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 SMARCC2Q8TAQ2 1214 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 MAP4K1Q92918 833 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 RBM28Q9NW13 759 aaKnown RBP14.02□□□□□ -0.16
TCOF1-205ENST00000439160 SSH2Q76I76 1423 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 KIF2AO00139 706 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-205ENST00000439160 IBSPP21815 317 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-205ENST00000439160 DNA2P51530 1060 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 FAM47AQ5JRC9 791 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 ANO1Q5XXA6 986 aa14.02□□□□□ -0.16
TCOF1-205ENST00000439160 KIF5CO60282 957 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 LEO1Q8WVC0 666 aaPredicted RBP14.02□□□□□ -0.17
TCOF1-205ENST00000439160 GTF3C6Q969F1 213 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 FBXO3Q9UK99 471 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 CDC42BPGQ6DT37 1551 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 POLD1P28340 1107 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 GTF2IP78347 998 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 FAM160A1Q05DH4 1040 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 RILPL1Q5EBL4 403 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 IFNL3Q8IZI9 196 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 RBSNQ9H1K0 784 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 LMBRD1Q9NUN5 540 aa14.02□□□□□ -0.17
TCOF1-205ENST00000439160 KIDINS220Q9ULH0 1771 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 LRRC7Q96NW7 1537 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 H0YIN7 160 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 LETM2Q2VYF4 491 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 MFSD14BQ5SR56 506 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 KRT40Q6A162 431 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 FAM196AQ6ZSG2 479 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 QTRT2Q9H974 415 aaKnown RBP14.01□□□□□ -0.17
TCOF1-205ENST00000439160 RMND1Q9NWS8 449 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 KCNJ14Q9UNX9 436 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 USP31Q70CQ4 1352 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 POLA2Q14181 598 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 SPECC1Q5M775 1068 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 ADD1P35611 737 aaKnown RBP14.01□□□□□ -0.17
TCOF1-205ENST00000439160 TFAP4Q01664 338 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 TCP10Q12799 353 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 DTHD1Q6ZMT9 781 aa14.01□□□□□ -0.17
TCOF1-205ENST00000439160 CMTR1Q8N1G2 835 aaKnown RBP14.01□□□□□ -0.17
TCOF1-205ENST00000439160 CLTCQ00610 1675 aaKnown RBP14.01□□□□□ -0.17
TCOF1-205ENST00000439160 SPDYE3A6NKU9 549 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 SKILP12757 684 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 PPARAQ07869 468 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 ATL3Q6DD88 541 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 NEXMIFQ5QGS0 1516 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 CYP21A2P08686 494 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 PIK3AP1Q6ZUJ8 805 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 CIAO1O76071 339 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 ERMNQ8TAM6 284 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 HLFQ16534 295 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 SCLT1Q96NL6 688 aa14□□□□□ -0.17
TCOF1-205ENST00000439160 PSMA7O14818 248 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 TBCAO75347 108 aaKnown RBP13.99□□□□□ -0.17
TCOF1-205ENST00000439160 TRIM37O94972 964 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 AXDND1Q5T1B0 1012 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-205ENST00000439160 KRT79Q5XKE5 535 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 SYCP3Q8IZU3 236 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 IQUBQ8NA54 791 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 GPR108Q9NPR9 543 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 TRPC5Q9UL62 973 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-205ENST00000439160 MED14O60244 1454 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 TRIM21P19474 475 aaKnown RBP13.99□□□□□ -0.17
TCOF1-205ENST00000439160 CBX1P83916 185 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 UBE2Q2Q8WVN8 375 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 TAF4BQ92750 862 aa13.99□□□□□ -0.17
TCOF1-205ENST00000439160 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.99□□□□□ -0.17
TCOF1-205ENST00000439160 CDR1P51861 262 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 TRAF1Q13077 416 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ZMYM1Q5SVZ6 1142 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 SYNE4Q8N205 404 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 LARGE2Q8N3Y3 721 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 PI4K2BQ8TCG2 481 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ZMYND15Q9H091 742 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ERFEQ4G0M1 354 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 LRRC27Q9C0I9 530 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 TMEM63CQ9P1W3 806 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ADAMTS13Q76LX8 1427 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 H7C1W4 665 aa13.98□□□□□ -0.17
TCOF1-205ENST00000439160 ZNF654Q8IZM8 581 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms