RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GPIHBP1Q8IV16 184 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 RSPH14Q9UHP6 348 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 LUC7L2Q9Y383 392 aaKnown RBP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 ATP6V0A2Q9Y487 856 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 ZNF518AQ6AHZ1 1483 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 CCNT1O60563 726 aaKnown RBP19.35■□□□□ 0.69
PTPRF-209ENST00000438120 CTDSPL2Q05D32 466 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 RAD50Q92878 1312 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 PUM3Q15397 648 aaKnown RBP19.35■□□□□ 0.69
PTPRF-209ENST00000438120 KRT5P13647 590 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 KRT222Q8N1A0 295 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 NUP160Q12769 1436 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 MAEAQ7L5Y9 396 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 GOLGA1Q92805 767 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 ZNF408Q9H9D4 720 aa19.35■□□□□ 0.69
PTPRF-209ENST00000438120 MAPKBP1O60336 1514 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 TLDC2A0PJX2 215 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 B4DLN1 442 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 SLU7O95391 586 aaKnown RBP19.34■□□□□ 0.69
PTPRF-209ENST00000438120 MRPL12P52815 198 aaKnown RBP19.34■□□□□ 0.69
PTPRF-209ENST00000438120 C6orf163Q5TEZ5 329 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 ZKSCAN5Q9Y2L8 839 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 ERCC3P19447 782 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 PRKG1Q13976 671 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 YTHDC2Q9H6S0 1430 aaKnown RBP19.34■□□□□ 0.69
PTPRF-209ENST00000438120 BIRC3Q13489 604 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 APBB1IPQ7Z5R6 666 aaPredicted RBP19.34■□□□□ 0.69
PTPRF-209ENST00000438120 CCDC77Q9BR77 488 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 VPS16Q9H269 839 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 SH3TC1Q8TE82 1336 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 FNBP4Q8N3X1 1017 aaPredicted RBP19.34■□□□□ 0.69
PTPRF-209ENST00000438120 CCDC114Q96M63 670 aa19.34■□□□□ 0.69
PTPRF-209ENST00000438120 TXKP42681 527 aa19.33■□□□□ 0.69
PTPRF-209ENST00000438120 NBPF14Q5TI25 921 aa19.33■□□□□ 0.69
PTPRF-209ENST00000438120 UGGT2Q9NYU1 1516 aa19.33■□□□□ 0.69
PTPRF-209ENST00000438120 PDE4DQ08499 809 aa19.33■□□□□ 0.69
PTPRF-209ENST00000438120 CCDC169A6NNP5 214 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 DDX39AO00148 427 aaKnown RBP19.33■□□□□ 0.68
PTPRF-209ENST00000438120 GPAA1O43292 621 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 PPM1EQ8WY54 764 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 LMTK3Q96Q04 1460 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 DDX12PQ92771 950 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 SUCLG2Q96I99 432 aa19.33■□□□□ 0.68
PTPRF-209ENST00000438120 NOC4LQ9BVI4 516 aaKnown RBP19.33■□□□□ 0.68
PTPRF-209ENST00000438120 USP19O94966 1318 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 CCDC65Q8IXS2 484 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 LRRC45Q96CN5 670 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 ELP1O95163 1332 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 WDR70Q9NW82 654 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 PDE8AO60658 829 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 PPP1R7Q15435 360 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 SREK1Q8WXA9 508 aaKnown RBP19.32■□□□□ 0.68
PTPRF-209ENST00000438120 TEX14Q8IWB6 1497 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 ZFYVE9O95405 1425 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 ATP2A1O14983 1001 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 INTS4Q96HW7 963 aaKnown RBP19.32■□□□□ 0.68
PTPRF-209ENST00000438120 hCG_1642624A0A1W2PR95 340 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 FRMD4BQ9Y2L6 1034 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 SNX14Q9Y5W7 946 aa19.32■□□□□ 0.68
PTPRF-209ENST00000438120 TCP10Q12799 353 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.31■□□□□ 0.68
PTPRF-209ENST00000438120 GGA1Q9UJY5 639 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 GINS2Q9Y248 185 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 CEP83Q9Y592 693 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 NUP153P49790 1475 aaKnown RBP19.31■□□□□ 0.68
PTPRF-209ENST00000438120 IL13P35225 146 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 RNASE9P60153 205 aaKnown RBP19.31■□□□□ 0.68
PTPRF-209ENST00000438120 CCDC122Q5T0U0 273 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 PNMA6EA0A0J9YXQ4 647 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 MYCLP12524 364 aaPredicted RBP19.31■□□□□ 0.68
PTPRF-209ENST00000438120 MYL5Q02045 173 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 FAM98CQ17RN3 349 aaKnown RBP19.31■□□□□ 0.68
PTPRF-209ENST00000438120 ZMYM3Q14202 1370 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 DEXIO95424 95 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 KRT9P35527 623 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 PHKBQ93100 1093 aa19.31■□□□□ 0.68
PTPRF-209ENST00000438120 FAM170AA1A519 330 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 CCDC6Q16204 474 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 BIN2Q9UBW5 565 aaPredicted RBP19.3■□□□□ 0.68
PTPRF-209ENST00000438120 TRPM2O94759 1503 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 OPA1O60313 960 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 FAM160A1Q05DH4 1040 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 FNBP1Q96RU3 617 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 PODXL2Q9NZ53 605 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 TAF12Q16514 161 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 NDC80O14777 642 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 ZEB2O60315 1214 aa19.3■□□□□ 0.68
PTPRF-209ENST00000438120 RPL13P26373 211 aaKnown RBP19.3■□□□□ 0.68
PTPRF-209ENST00000438120 LEO1Q8WVC0 666 aaPredicted RBP19.3■□□□□ 0.68
PTPRF-209ENST00000438120 BAG1Q99933 345 aaPredicted RBP19.3■□□□□ 0.68
PTPRF-209ENST00000438120 NSRP1Q9H0G5 558 aaKnown RBP19.3■□□□□ 0.68
PTPRF-209ENST00000438120 HSPA4P34932 840 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 USH1GQ495M9 461 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 ANO1Q5XXA6 986 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.29■□□□□ 0.68
PTPRF-209ENST00000438120 NCAPH2Q6IBW4 605 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 GPATCH11Q8N954 259 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 KCNK9Q9NPC2 374 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 PICK1Q9NRD5 415 aa19.29■□□□□ 0.68
PTPRF-209ENST00000438120 VPS18Q9P253 973 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms