RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 NBPF12Q5TAG4 269 aaPredicted RBP22.75■■□□□ 1.23
SHH-202ENST00000430104 CYP4F22Q6NT55 531 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 TMEM39BQ9GZU3 492 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 BOLA2Q9H3K6 86 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 ZBTB47Q9UFB7 747 aaPredicted RBP22.75■■□□□ 1.23
SHH-202ENST00000430104 FZD1Q9UP38 647 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 MAST2Q6P0Q8 1798 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 GAKO14976 1311 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 PAPPA2Q9BXP8 1791 aa22.74■■□□□ 1.23
SHH-202ENST00000430104 IDH1O75874 414 aaKnown RBP22.74■■□□□ 1.23
SHH-202ENST00000430104 ANKRD45Q5TZF3 282 aa22.74■■□□□ 1.23
SHH-202ENST00000430104 NAA16Q6N069 864 aaPredicted RBP22.74■■□□□ 1.23
SHH-202ENST00000430104 RWDD1Q9H446 243 aaPredicted RBP22.74■■□□□ 1.23
SHH-202ENST00000430104 UBE2Q2LH0YL09 131 aa22.73■■□□□ 1.23
SHH-202ENST00000430104 TCP10Q12799 353 aa22.73■■□□□ 1.23
SHH-202ENST00000430104 SUPT20HL1Q3ZLR7 823 aa22.73■■□□□ 1.23
SHH-202ENST00000430104 FAM163AQ96GL9 167 aaPredicted RBP22.73■■□□□ 1.23
SHH-202ENST00000430104 CAPNS2Q96L46 248 aa22.73■■□□□ 1.23
SHH-202ENST00000430104 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.73■■□□□ 1.23
SHH-202ENST00000430104 GOLIM4O00461 696 aa22.72■■□□□ 1.23
SHH-202ENST00000430104 ATP5JP18859 108 aa22.72■■□□□ 1.23
SHH-202ENST00000430104 CDAN1Q8IWY9 1227 aa22.72■■□□□ 1.23
SHH-202ENST00000430104 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.72■■□□□ 1.23
SHH-202ENST00000430104 GCC1Q96CN9 775 aa22.72■■□□□ 1.23
SHH-202ENST00000430104 ANGEL1Q9UNK9 670 aaKnown RBP22.72■■□□□ 1.23
SHH-202ENST00000430104 DOCK2Q92608 1830 aa22.72■■□□□ 1.23
SHH-202ENST00000430104 WDR33Q9C0J8 1336 aaKnown RBP22.72■■□□□ 1.23
SHH-202ENST00000430104 GPR75-ASB3A0A0A6YYF3 556 aa22.71■■□□□ 1.23
SHH-202ENST00000430104 IGHDP01880 384 aa22.71■■□□□ 1.23
SHH-202ENST00000430104 ECE1P42892 770 aa22.71■■□□□ 1.23
SHH-202ENST00000430104 NFIAQ12857 509 aa22.71■■□□□ 1.23
SHH-202ENST00000430104 ARMC9Q7Z3E5 817 aa22.71■■□□□ 1.23
SHH-202ENST00000430104 EDC3Q96F86 508 aaKnown RBP22.71■■□□□ 1.23
SHH-202ENST00000430104 NOL10Q9BSC4 688 aaKnown RBP22.71■■□□□ 1.23
SHH-202ENST00000430104 FKBP1BP68106 108 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 TTF1Q15361 905 aaPredicted RBP22.7■■□□□ 1.22
SHH-202ENST00000430104 FKBP1CQ5VVH2 108 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 TSHZ3Q63HK5 1081 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 RGMBQ6NW40 437 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 FAM83AQ86UY5 434 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 MAGEB6Q8N7X4 407 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 GPATCH3Q96I76 525 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 TEPSINQ96N21 525 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 ECHDC1Q9NTX5 307 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 SSC5DA1L4H1 1573 aa22.7■■□□□ 1.22
SHH-202ENST00000430104 CYP7A1P22680 504 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 ZNF157P51786 506 aaPredicted RBP22.69■■□□□ 1.22
SHH-202ENST00000430104 MAP3K12Q12852 859 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 PICALMQ13492 652 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 B4GALNT3Q6L9W6 998 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 HHIPL1Q96JK4 782 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 AATFQ9NY61 560 aaKnown RBP eCLIP22.69■■□□□ 1.22
SHH-202ENST00000430104 FAM198AQ9UFP1 575 aa22.69■■□□□ 1.22
SHH-202ENST00000430104 CEP350Q5VT06 3117 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 PPP1R12BO60237 982 aaPredicted RBP22.68■■□□□ 1.22
SHH-202ENST00000430104 AOC2O75106 756 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 RGS3P49796 1198 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 ADGRA1Q86SQ6 560 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 OTUD7AQ8TE49 926 aaPredicted RBP22.68■■□□□ 1.22
SHH-202ENST00000430104 FAM151AQ8WW52 585 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 HAUS7Q99871 368 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 PAG1Q9NWQ8 432 aa22.68■■□□□ 1.22
SHH-202ENST00000430104 ZFPM1Q8IX07 1006 aa22.67■■□□□ 1.22
SHH-202ENST00000430104 JMYQ8N9B5 988 aa22.67■■□□□ 1.22
SHH-202ENST00000430104 USP2O75604 605 aaPredicted RBP22.66■■□□□ 1.22
SHH-202ENST00000430104 BAG3O95817 575 aa22.66■■□□□ 1.22
SHH-202ENST00000430104 RHBDL3P58872 404 aa22.66■■□□□ 1.22
SHH-202ENST00000430104 SH3RF3Q8TEJ3 882 aaPredicted RBP22.66■■□□□ 1.22
SHH-202ENST00000430104 WDHD1O75717 1129 aaPredicted RBP22.65■■□□□ 1.22
SHH-202ENST00000430104 DYNLL1P63167 89 aaKnown RBP22.65■■□□□ 1.22
SHH-202ENST00000430104 SLC9C2Q5TAH2 1124 aa22.65■■□□□ 1.22
SHH-202ENST00000430104 ZSCAN29Q8IWY8 852 aaPredicted RBP22.65■■□□□ 1.22
SHH-202ENST00000430104 TEX11Q8IYF3 940 aa22.65■■□□□ 1.22
SHH-202ENST00000430104 MIGA1Q8NAN2 632 aa22.65■■□□□ 1.22
SHH-202ENST00000430104 IDI2Q9BXS1 227 aa22.65■■□□□ 1.22
SHH-202ENST00000430104 DDX4Q9NQI0 724 aaKnown RBP22.65■■□□□ 1.22
SHH-202ENST00000430104 IGSF3O75054 1194 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 ENTPD3O75355 529 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 IREB2P48200 963 aaKnown RBP22.64■■□□□ 1.21
SHH-202ENST00000430104 SMC5Q8IY18 1101 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 CCDC102AQ96A19 550 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 LNPKQ9C0E8 428 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 MYH7P12883 1935 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 CDK5RAP2Q96SN8 1893 aa22.64■■□□□ 1.21
SHH-202ENST00000430104 MAP4K4O95819 1239 aaPredicted RBP22.63■■□□□ 1.21
SHH-202ENST00000430104 PDE6AP16499 860 aa22.63■■□□□ 1.21
SHH-202ENST00000430104 MIGA2Q7L4E1 593 aa22.63■■□□□ 1.21
SHH-202ENST00000430104 PLCG2P16885 1265 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 MX1P20591 662 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 PPP4CP60510 307 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 LDLRAD1Q5T700 205 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 RASAL3Q86YV0 1011 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 HOOK2Q96ED9 719 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 CLMNQ96JQ2 1002 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 RFX7Q2KHR2 1363 aa22.62■■□□□ 1.21
SHH-202ENST00000430104 RPAP1Q9BWH6 1393 aaPredicted RBP22.62■■□□□ 1.21
SHH-202ENST00000430104 OTOFQ9HC10 1997 aa22.61■■□□□ 1.21
SHH-202ENST00000430104 TTC41PQ6P2S7 1318 aa22.61■■□□□ 1.21
SHH-202ENST00000430104 ZNF532Q9HCE3 1301 aa22.61■■□□□ 1.21
SHH-202ENST00000430104 FAM155AB1AL88 458 aaPredicted RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms