RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 AP5Z1O43299 807 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 PRDM1O75626 825 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 CDC27P30260 824 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 SETDB2Q96T68 719 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 SLC26A6Q9BXS9 759 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 NACAP1Q9BZK3 213 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.77□□□□□ -0.37
DDX56-203ENST00000421223 SLC12A7Q9Y666 1083 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 CYP2D7A0A087X1C5 515 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 CPLX2Q6PUV4 134 aaKnown RBP12.76□□□□□ -0.37
DDX56-203ENST00000421223 FUCA2Q9BTY2 467 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 GOLPH3LQ9H4A5 285 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 CLSTN2Q9H4D0 955 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 GSG1L2A8MUP6 293 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 ZNF165P49910 485 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 DYNLL1P63167 89 aaKnown RBP12.76□□□□□ -0.37
DDX56-203ENST00000421223 UVSSAQ2YD98 709 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 CAVIN4Q5BKX8 364 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 APOA5Q6Q788 366 aa12.76□□□□□ -0.37
DDX56-203ENST00000421223 SAMD1Q6SPF0 538 aaPredicted RBP12.76□□□□□ -0.37
DDX56-203ENST00000421223 ILDR1Q86SU0 546 aaPredicted RBP12.76□□□□□ -0.37
DDX56-203ENST00000421223 GNL3LQ9NVN8 582 aaKnown RBP12.76□□□□□ -0.37
DDX56-203ENST00000421223 KLRK1P26718 216 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 ISM2Q6H9L7 571 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 ADGRA1Q86SQ6 560 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 FBXO18Q8NFZ0 1043 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 FAM200AQ8TCP9 573 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 ZNF512BQ96KM6 892 aaPredicted RBP12.75□□□□□ -0.37
DDX56-203ENST00000421223 TRIM5Q9C035 493 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 CBX8Q9HC52 389 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 CCNL1Q9UK58 526 aaPredicted RBP12.75□□□□□ -0.37
DDX56-203ENST00000421223 USP21Q9UK80 565 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 KIF28PB7ZC32 967 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 IARSP41252 1262 aaKnown RBP12.75□□□□□ -0.37
DDX56-203ENST00000421223 KIAA2012Q0VF49 1180 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 MEX3CQ5U5Q3 659 aaKnown RBP12.75□□□□□ -0.37
DDX56-203ENST00000421223 SLC51AQ86UW1 340 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 RCOR1Q9UKL0 485 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 PCDHA7Q9UN72 937 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 LRP6O75581 1613 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 NUP98P52948 1817 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 BIN1O00499 593 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 SH2B2O14492 632 aaPredicted RBP12.75□□□□□ -0.37
DDX56-203ENST00000421223 AK7Q96M32 723 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 MINPP1Q9UNW1 487 aa12.75□□□□□ -0.37
DDX56-203ENST00000421223 SLIT2O94813 1529 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 hCG_1642624A0A1W2PR95 340 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 ERICH2A1L162 156 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 TRIM29Q14134 588 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 ZRSR1Q15695 479 aaKnown RBP12.74□□□□□ -0.37
DDX56-203ENST00000421223 AKNAD1Q5T1N1 836 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 BARGINQ6ZT62 677 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 PIBF1Q8WXW3 757 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 TACC3Q9Y6A5 838 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 MAGEB6P1A0A0J9YX57 407 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 RANBP6O60518 1105 aaKnown RBP12.74□□□□□ -0.37
DDX56-203ENST00000421223 TICAM2Q86XR7 235 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 DOT1LQ8TEK3 1739 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 SALL1Q9NSC2 1324 aa12.74□□□□□ -0.37
DDX56-203ENST00000421223 ABCC12Q96J65 1359 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 BECN2A8MW95 431 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 GOLGA6L19H0YKK7 550 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 RPS8P62241 208 aaKnown RBP12.73□□□□□ -0.37
DDX56-203ENST00000421223 MYSM1Q5VVJ2 828 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 KRT40Q6A162 431 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 AMIGO3Q86WK7 504 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 IGDCC4Q8TDY8 1250 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 UBAC1Q9BSL1 405 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 MTMR7Q9Y216 660 aa12.73□□□□□ -0.37
DDX56-203ENST00000421223 RTCBQ9Y3I0 505 aaKnown RBP12.73□□□□□ -0.37
DDX56-203ENST00000421223 COL16A1Q07092 1604 aaPredicted RBP12.73□□□□□ -0.37
DDX56-203ENST00000421223 WTAPQ15007 396 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 LY9Q9HBG7 655 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 KCNJ14Q9UNX9 436 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 SPTLC2O15270 562 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 BRD2P25440 801 aaKnown RBP12.72□□□□□ -0.37
DDX56-203ENST00000421223 NDUFA8P51970 172 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 SART3Q15020 963 aaKnown RBP12.72□□□□□ -0.37
DDX56-203ENST00000421223 ZMYM6O95789 1325 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 MYH14Q7Z406 1995 aaKnown RBP12.72□□□□□ -0.37
DDX56-203ENST00000421223 OFD1O75665 1012 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 CDKL5O76039 1030 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 RFC4P35249 363 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 CLEC4GQ6UXB4 293 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 TMEM87BQ96K49 555 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 FAM84BQ96KN1 310 aaPredicted RBP12.72□□□□□ -0.37
DDX56-203ENST00000421223 GPR101Q96P66 508 aaPredicted RBP12.72□□□□□ -0.37
DDX56-203ENST00000421223 AATFQ9NY61 560 aaKnown RBP eCLIP12.72□□□□□ -0.37
DDX56-203ENST00000421223 ANKIB1Q9P2G1 1089 aa12.72□□□□□ -0.37
DDX56-203ENST00000421223 MYO5AQ9Y4I1 1855 aaKnown RBP12.71□□□□□ -0.37
DDX56-203ENST00000421223 GUCY1A2P33402 732 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 EVCP57679 992 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 PPARAQ07869 468 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 SSRP1Q08945 709 aaKnown RBP12.71□□□□□ -0.37
DDX56-203ENST00000421223 SPECC1Q5M775 1068 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 TPTE2Q6XPS3 522 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 C11orf57Q6ZUT1 292 aaPredicted RBP12.71□□□□□ -0.37
DDX56-203ENST00000421223 MRPS27Q92552 414 aaKnown RBP12.71□□□□□ -0.37
DDX56-203ENST00000421223 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms