RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SPDYE5A6NIY4 337 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 IRF6O14896 467 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 BCAR3O75815 825 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 LDHBP07195 334 aaKnown RBP14.4□□□□□ -0.1
USP4-204ENST00000416417 SLURP2P0DP57 97 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 IL15P40933 162 aaPredicted RBP14.4□□□□□ -0.1
USP4-204ENST00000416417 EFCC1Q9HA90 598 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 USP40Q9NVE5 1235 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 FAM198AQ9UFP1 575 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 PTPN22Q9Y2R2 807 aa14.4□□□□□ -0.1
USP4-204ENST00000416417 BTBD19C9JJ37 291 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 CCER2I3L3R5 266 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 CT47B1P0C2W7 299 aaPredicted RBP14.39□□□□□ -0.11
USP4-204ENST00000416417 TFCP2Q12800 502 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 CCDC102BQ68D86 513 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 FAM151AQ8WW52 585 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 FRAT1Q92837 279 aaPredicted RBP14.39□□□□□ -0.11
USP4-204ENST00000416417 CLUAP1Q96AJ1 413 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 ARHGAP39Q9C0H5 1083 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 GNL3LQ9NVN8 582 aaKnown RBP14.39□□□□□ -0.11
USP4-204ENST00000416417 MYH13Q9UKX3 1938 aa14.39□□□□□ -0.11
USP4-204ENST00000416417 SRGAP3O43295 1099 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 FKBP1CQ5VVH2 108 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 INTS3Q68E01 1043 aaKnown RBP14.38□□□□□ -0.11
USP4-204ENST00000416417 ERO1BQ86YB8 467 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 ZNF341Q9BYN7 854 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 ZFYVE28Q9HCC9 887 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 COPRSQ9NQ92 184 aa14.38□□□□□ -0.11
USP4-204ENST00000416417 MYCP01106 439 aaPredicted RBP14.37□□□□□ -0.11
USP4-204ENST00000416417 RASGRF1Q13972 1273 aa14.37□□□□□ -0.11
USP4-204ENST00000416417 DCAF15Q66K64 600 aa14.37□□□□□ -0.11
USP4-204ENST00000416417 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.37□□□□□ -0.11
USP4-204ENST00000416417 ABCF2Q9UG63 623 aa14.37□□□□□ -0.11
USP4-204ENST00000416417 FBXO3Q9UK99 471 aa14.37□□□□□ -0.11
USP4-204ENST00000416417 DENND2AQ9ULE3 1009 aa14.37□□□□□ -0.11
USP4-204ENST00000416417 A0A1B0GUL7 405 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 SLC34A2O95436 690 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 CETPP11597 493 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 TRIM27P14373 513 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 PPIL2Q13356 520 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 XAGE2Q96GT9 111 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 PTCH2Q9Y6C5 1203 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 ZSWIM8A7E2V4 1837 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 RPAP1Q9BWH6 1393 aaPredicted RBP14.36□□□□□ -0.11
USP4-204ENST00000416417 RGS3P49796 1198 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 SNAPC2Q13487 334 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 PI16Q6UXB8 463 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 HOOK2Q96ED9 719 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 NEUROD6Q96NK8 337 aa14.36□□□□□ -0.11
USP4-204ENST00000416417 SALL1Q9NSC2 1324 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 CENPFP49454 3210 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 GNAI3P08754 354 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 EN2P19622 333 aaPredicted RBP14.35□□□□□ -0.11
USP4-204ENST00000416417 SH3BP5LQ7L8J4 393 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 DZIP1Q86YF9 867 aaKnown RBP14.35□□□□□ -0.11
USP4-204ENST00000416417 ARHGAP45Q92619 1136 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 CPA4Q9UI42 421 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 ZNF112Q9UJU3 913 aa14.35□□□□□ -0.11
USP4-204ENST00000416417 PNMA6EA0A0J9YXQ4 647 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 SEMA3EO15041 775 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 PPATQ06203 517 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 PICALMQ13492 652 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 TBC1D9Q6ZT07 1266 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 DDX4Q9NQI0 724 aaKnown RBP14.34□□□□□ -0.11
USP4-204ENST00000416417 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.34□□□□□ -0.11
USP4-204ENST00000416417 HDAC5Q9UQL6 1122 aa14.34□□□□□ -0.11
USP4-204ENST00000416417 DDTLA6NHG4 134 aaPredicted RBP14.33□□□□□ -0.12
USP4-204ENST00000416417 TLR2O60603 784 aa14.33□□□□□ -0.12
USP4-204ENST00000416417 BTDP43251 543 aa14.33□□□□□ -0.12
USP4-204ENST00000416417 PRPF38BQ5VTL8 546 aaKnown RBP14.33□□□□□ -0.12
USP4-204ENST00000416417 ATF7IPQ6VMQ6 1270 aa14.33□□□□□ -0.12
USP4-204ENST00000416417 ZSCAN29Q8IWY8 852 aaPredicted RBP14.33□□□□□ -0.12
USP4-204ENST00000416417 ZNF384Q8TF68 577 aa14.33□□□□□ -0.12
USP4-204ENST00000416417 PDHXO00330 501 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 CTGFP29279 349 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 MECOMQ03112 1051 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 MTX1Q13505 466 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 MOGSQ13724 837 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 CCDC84Q86UT8 332 aaPredicted RBP14.32□□□□□ -0.12
USP4-204ENST00000416417 TMEM57Q8N5G2 664 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 SH3TC2Q8TF17 1288 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 ARMC5Q96C12 935 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 HMG20BQ9P0W2 317 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 GAKO14976 1311 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 AK9Q5TCS8 1911 aa14.32□□□□□ -0.12
USP4-204ENST00000416417 FAM196BA6NMK8 535 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 PHF20L1A8MW92 1017 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 WDHD1O75717 1129 aaPredicted RBP14.31□□□□□ -0.12
USP4-204ENST00000416417 GNAI2P04899 355 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 LACTBP83111 547 aaPredicted RBP14.31□□□□□ -0.12
USP4-204ENST00000416417 MVPQ14764 893 aaKnown RBP14.31□□□□□ -0.12
USP4-204ENST00000416417 SLC9C1Q4G0N8 1177 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 ZGPATQ8N5A5 531 aaKnown RBP14.31□□□□□ -0.12
USP4-204ENST00000416417 C1orf115Q9H7X2 142 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 KCNH4Q9UQ05 1017 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 AKAP2Q9Y2D5 859 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 ATRNL1Q5VV63 1379 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 MYH2Q9UKX2 1941 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 IPO8O15397 1037 aaKnown RBP14.31□□□□□ -0.12
USP4-204ENST00000416417 NOL9Q5SY16 702 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms