RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 AGGF1Q8N302 714 aaeCLIP7.29□□□□□ -1.24
VPS54-204ENST00000416400 ACSBG1Q96GR2 724 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 TRIM56Q9BRZ2 755 aaKnown RBP7.29□□□□□ -1.24
VPS54-204ENST00000416400 ZC3H12CQ9C0D7 883 aaKnown RBP7.29□□□□□ -1.24
VPS54-204ENST00000416400 CYP8B1Q9UNU6 501 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 ALX3O95076 343 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 SLFN14P0C7P3 912 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 PWP1Q13610 501 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 SF3A1Q15459 793 aaKnown RBP7.28□□□□□ -1.24
VPS54-204ENST00000416400 MAP3K11Q16584 847 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 PLA2G4EQ3MJ16 856 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 PCNX4Q63HM2 1172 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 MAP1SQ66K74 1059 aaPredicted RBP7.28□□□□□ -1.24
VPS54-204ENST00000416400 ANKRD34AQ69YU3 496 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 TTBK2Q6IQ55 1244 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 LLGL2Q6P1M3 1020 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 RELL1Q8IUW5 271 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 C12orf50Q8NA57 414 aaPredicted RBP7.28□□□□□ -1.24
VPS54-204ENST00000416400 DRC1Q96MC2 740 aa7.28□□□□□ -1.24
VPS54-204ENST00000416400 MEGF11A6BM72 1044 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 TM4SF5O14894 197 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 GAS2O43903 313 aaKnown RBP7.27□□□□□ -1.25
VPS54-204ENST00000416400 GSK3AP49840 483 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 USP48Q86UV5 1035 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 KRT82Q9NSB4 513 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 GGT7Q9UJ14 662 aa7.27□□□□□ -1.25
VPS54-204ENST00000416400 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.27□□□□□ -1.25
VPS54-204ENST00000416400 PAGE1O75459 146 aa7.26□□□□□ -1.25
VPS54-204ENST00000416400 NOS3P29474 1203 aa7.26□□□□□ -1.25
VPS54-204ENST00000416400 ZNF394Q53GI3 561 aa7.26□□□□□ -1.25
VPS54-204ENST00000416400 TINF2Q9BSI4 451 aa7.26□□□□□ -1.25
VPS54-204ENST00000416400 CAPN10Q9HC96 672 aa7.26□□□□□ -1.25
VPS54-204ENST00000416400 MSTNO14793 375 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 ECEL1O95672 775 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 BMP6P22004 513 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 LIG3P49916 1009 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 RPS26P62854 115 aaKnown RBP7.25□□□□□ -1.25
VPS54-204ENST00000416400 GNL2Q13823 731 aaKnown RBP7.25□□□□□ -1.25
VPS54-204ENST00000416400 AKAP4Q5JQC9 854 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 SCARA3Q6AZY7 606 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 GPAT2Q6NUI2 795 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 ZNF654Q8IZM8 581 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 SMG8Q8ND04 991 aaKnown RBP7.25□□□□□ -1.25
VPS54-204ENST00000416400 TMPRSS13Q9BYE2 586 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 NRSN2Q9GZP1 204 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 ACBD3Q9H3P7 528 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 CCDC86Q9H6F5 360 aaKnown RBP7.25□□□□□ -1.25
VPS54-204ENST00000416400 DDX41Q9UJV9 622 aaKnown RBP7.25□□□□□ -1.25
VPS54-204ENST00000416400 PCDHGB7Q9Y5F8 929 aa7.25□□□□□ -1.25
VPS54-204ENST00000416400 AOC2O75106 756 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 TRIM37O94972 964 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 IGHA1P01876 353 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 LIG1P18858 919 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 GBP2P32456 591 aaPredicted RBP7.24□□□□□ -1.25
VPS54-204ENST00000416400 GRIN3AQ8TCU5 1115 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 STK35Q8TDR2 534 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 MIR1-1HGQ9H1L0 117 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 SUGCTQ9HAC7 445 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 AP4E1Q9UPM8 1137 aa7.24□□□□□ -1.25
VPS54-204ENST00000416400 DLGAP3O95886 979 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 CTSBP07858 339 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 USP11P51784 963 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 RACK1P63244 317 aaKnown RBP7.23□□□□□ -1.25
VPS54-204ENST00000416400 UVSSAQ2YD98 709 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 PDZD3Q86UT5 571 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 UTP4Q969X6 686 aaKnown RBP7.23□□□□□ -1.25
VPS54-204ENST00000416400 TP53INP1Q96A56 240 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 RSRP1Q9BUV0 290 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 YIPF2Q9BWQ6 316 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 PICK1Q9NRD5 415 aa7.23□□□□□ -1.25
VPS54-204ENST00000416400 TNNI2P48788 182 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 SOX4Q06945 474 aaPredicted RBP7.22□□□□□ -1.25
VPS54-204ENST00000416400 ZNF252P-AS1Q0IIN9 211 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 AGMOQ6ZNB7 445 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 DYMQ7RTS9 669 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 ERMP1Q7Z2K6 904 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 SLC43A3Q8NBI5 491 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 GPBAR1Q8TDU6 330 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 PPP1R1BQ9UD71 204 aaPredicted RBP7.22□□□□□ -1.25
VPS54-204ENST00000416400 PCDHA4Q9UN74 947 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 INPP5FQ9Y2H2 1132 aa7.22□□□□□ -1.25
VPS54-204ENST00000416400 MINDY4BA8MYZ0 360 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 DHX15O43143 795 aaKnown RBP7.21□□□□□ -1.26
VPS54-204ENST00000416400 ADH5P11766 374 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 RXRBP28702 533 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 ID3Q02535 119 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 KIF4BQ2VIQ3 1234 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 Q6ZS46 218 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 UBXN4Q92575 508 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 ELMO3Q96BJ8 720 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 MEGF10Q96KG7 1140 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 TMEM74Q96NL1 305 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 WDR18Q9BV38 432 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 TANGO6Q9C0B7 1094 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 PIDD1Q9HB75 910 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 SYNGAP1Q96PV0 1343 aa7.21□□□□□ -1.26
VPS54-204ENST00000416400 LOC105371045A0A1W2PR82 267 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 F6X3S4 739 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 ZNF862O60290 1169 aa7.2□□□□□ -1.26
VPS54-204ENST00000416400 DRD2P14416 443 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms