RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SPTY2D1Q68D10 685 aaPredicted RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 GK5Q6ZS86 529 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 CYP2U1Q7Z449 544 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 C1orf127Q8N9H9 656 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ASAP3Q8TDY4 903 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ZSCAN10Q96SZ4 725 aaPredicted RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 INSM2Q96T92 566 aaPredicted RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 SNTG2Q9NY99 539 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 TERF2IPQ9NYB0 399 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ADAMTS1Q9UHI8 967 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 LAS1LQ9Y4W2 734 aaKnown RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 SBF2Q86WG5 1849 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ESYT3A0FGR9 886 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 S100BP04271 92 aaPredicted RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 HCLS1P14317 486 aaPredicted RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 USP5P45974 858 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 CENPCQ03188 943 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 C11orf91Q3C1V1 193 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 THSD4Q6ZMP0 1018 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 FAM43BQ6ZT52 329 aaPredicted RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 SEPT12Q8IYM1 358 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 FAM169BQ8N8A8 192 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 FBXO27Q8NI29 283 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 TSR2Q969E8 191 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 C8orf48Q96LL4 319 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 KCNQ5Q9NR82 932 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 AFF2P51816 1311 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 FMN2Q9NZ56 1722 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 EIF3JO75822 258 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 DDAH1O94760 285 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 MICAL2O94851 1124 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 CELA3AP09093 270 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 CES1P23141 567 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 DEPDC7Q96QD5 511 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 ELP3Q9H9T3 547 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 MAGEC2Q9UBF1 373 aaPredicted RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 RTCBQ9Y3I0 505 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 PEAK1Q9H792 1746 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 PARP4Q9UKK3 1724 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 GRIN3BO60391 1043 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 RHBDL3P58872 404 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 TKFCQ3LXA3 575 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 C6orf118Q5T5N4 469 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 IL17RAQ96F46 866 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 CEP63Q96MT8 703 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 NSUN5Q96P11 429 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 GNL3LQ9NVN8 582 aaKnown RBP3.42□□□□□ -1.86
MCF2-204ENST00000414978 MYOM1P52179 1685 aa3.42□□□□□ -1.86
MCF2-204ENST00000414978 IFT172Q9UG01 1749 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 B2RBV5 119 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 CDC45O75419 566 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 LMNB1P20700 586 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 EIF4A3P38919 411 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 NFE2Q16621 373 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 ESCO1Q5FWF5 840 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 FBXL19Q6PCT2 694 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 LILRB2Q8N423 598 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ZNF296Q8WUU4 475 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 OTUD5Q96G74 571 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ZC3H12CQ9C0D7 883 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 EHD4Q9H223 541 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 LEMD3Q9Y2U8 911 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 GJA3Q9Y6H8 435 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 MTUS2Q5JR59 1369 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 IRS4O14654 1257 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 SMAD7O15105 426 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 PAX3P23760 479 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 TARSP26639 723 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 CT47A1Q5JQC4 288 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 DTHD1Q6ZMT9 781 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 FMNL3Q8IVF7 1028 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 EMID1Q96A84 441 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 PLD4Q96BZ4 506 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 HHIPQ96QV1 700 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 FERD3LQ96RJ6 166 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ESYT1Q9BSJ8 1104 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 NIFKQ9BYG3 293 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 POLMQ9NP87 494 aaPredicted RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 KCNG1Q9UIX4 513 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ADAMTS13Q76LX8 1427 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ADGRL3Q9HAR2 1447 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 CFAP65Q6ZU64 1925 aaKnown RBP3.41□□□□□ -1.86
MCF2-204ENST00000414978 DLC1Q96QB1 1528 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 FIGNL2A6NMB9 653 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 HRO43593 1189 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 PBX2P40425 430 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 RTN1Q16799 776 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 SNAP47Q5SQN1 464 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 ODR4Q5SWX8 454 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 PPP1R14AQ96A00 147 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 MRGPRX2Q96LB1 330 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 CITED4Q96RK1 184 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 PXDNQ92626 1479 aa3.41□□□□□ -1.86
MCF2-204ENST00000414978 TRPM3Q9HCF6 1732 aaPredicted RBP3.4□□□□□ -1.86
MCF2-204ENST00000414978 TNFRSF10AO00220 468 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 PPP1R12AO14974 1030 aaPredicted RBP3.4□□□□□ -1.86
MCF2-204ENST00000414978 XYLBO75191 536 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 SASH3O75995 380 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 GNRH1P01148 92 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 GTF2E1P29083 439 aaPredicted RBP3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms