RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 GRIN2AQ12879 1464 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 GOLGA8AA7E2F4 631 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 VSNL1P62760 191 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 CWF19L2Q2TBE0 894 aaKnown RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 VSTM4Q8IW00 320 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 HGSO14964 777 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 HNRNPH1P31943 449 aaKnown RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 MTIF2P46199 727 aaKnown RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 MYSM1Q5VVJ2 828 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 CACNA2D4Q7Z3S7 1137 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 TMTC1Q8IUR5 882 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 KLHDC4Q8TBB5 520 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 CCDC85AQ96PX6 553 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 MAPK8IP1Q9UQF2 711 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 EIF4G3O43432 1585 aaKnown RBP10.51□□□□□ -0.73
COL28A1-201ENST00000399429 PPP1R7Q15435 360 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 CYP26C1Q6V0L0 522 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 IQCA1Q86XH1 822 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 CCDC50Q8IVM0 306 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 ANKS4BQ8N8V4 417 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 PCDHA5Q9Y5H7 936 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 ITSN2Q9NZM3 1697 aa10.51□□□□□ -0.73
COL28A1-201ENST00000399429 PRC1O43663 620 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 PDCLQ13371 301 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 ACRBPQ8NEB7 543 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 CCDC42Q96M95 316 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 PTCH1Q13635 1447 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 A6NNZ2 444 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 GGCXP38435 758 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 MRPS25P82663 173 aaKnown RBP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 TUBB8Q3ZCM7 444 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 C8orf74Q6P047 294 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 ZNF530Q6P9A1 599 aaPredicted RBP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 GSPT2Q8IYD1 628 aaKnown RBP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SSH3Q8TE77 659 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 WASF1Q92558 559 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 MAP4K1Q92918 833 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 TLDC2A0PJX2 215 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 CLTAP09496 248 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SSRP1Q08945 709 aaKnown RBP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 CLIC6Q96NY7 704 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SAMD9Q5K651 1589 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SMIM23A6NLE4 172 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 KIF5BP33176 963 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SATB1Q01826 763 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 PLA2R1Q13018 1463 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 KRI1Q8N9T8 703 aaKnown RBP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 MLKLQ8NB16 471 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 RAPGEF6Q8TEU7 1601 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 TRIM47Q96LD4 638 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.5□□□□□ -0.73
COL28A1-201ENST00000399429 SHANK2Q9UPX8 1470 aa10.5□□□□□ -0.73
COL28A1-201ENST00000399429 ANKRD18BA2A2Z9 1011 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 IDH1O75874 414 aaKnown RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 GUCY2FP51841 1108 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 MAP3K9P80192 1104 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 RBBP5Q15291 538 aaKnown RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 LRRC31Q6UY01 552 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 ANKRD24Q8TF21 1146 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 POLD4Q9HCU8 107 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 WWC3Q9ULE0 1092 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 SLC12A7Q9Y666 1083 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 TMCO5BA8MYB1 307 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 IKBKBO14920 756 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 PRR29P0C7W0 189 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 CASP14P31944 242 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 NCOA7Q8NI08 942 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 DPF2Q92785 391 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 SELENOSQ9BQE4 189 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 DBF4Q9UBU7 674 aaPredicted RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 ARID4AP29374 1257 aaPredicted RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 SF3B2Q13435 895 aaKnown RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 NECTIN1Q15223 517 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 STAMQ92783 540 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 MYD88Q99836 296 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 TAB2Q9NYJ8 693 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 DONSONQ9NYP3 566 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 KDM5AP29375 1690 aaKnown RBP10.49□□□□□ -0.73
COL28A1-201ENST00000399429 CFAP74Q9C0B2 1584 aa10.49□□□□□ -0.73
COL28A1-201ENST00000399429 GOLGA8KD6RF30 607 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 IFIT3O14879 490 aaKnown RBP10.48□□□□□ -0.73
COL28A1-201ENST00000399429 ZRANB2O95218 330 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL28A1-201ENST00000399429 SPAG1Q07617 926 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 MTF1Q14872 753 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 POSTNQ15063 836 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 JAKMIP2Q96AA8 810 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 AKAP2Q9Y2D5 859 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 SYCP2Q9BX26 1530 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 CMA1P23946 247 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 ELF1P32519 619 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 CEP126Q9P2H0 1117 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 TTC21AQ8NDW8 1320 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 COBLO75128 1261 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 SCP2P22307 547 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 RBL2Q08999 1139 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 IDI1Q13907 227 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 CCDC40Q4G0X9 1142 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 PI4K2BQ8TCG2 481 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms