RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 MTFR1Q15390 333 aa20.29■□□□□ 0.84
CUX2-202ENST00000397643 METTL24Q5JXM2 366 aa20.29■□□□□ 0.84
CUX2-202ENST00000397643 PPATQ06203 517 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 CAVIN4Q5BKX8 364 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 MIER1Q8N108 512 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 HOOK2Q96ED9 719 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 TRIM47Q96LD4 638 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 TMOD2Q9NZR1 351 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 CPA4Q9UI42 421 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 SUGT1Q9Y2Z0 365 aa20.28■□□□□ 0.84
CUX2-202ENST00000397643 KIF16BQ96L93 1317 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 FGFR2P21802 821 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 MOGSQ13724 837 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 DCAF15Q66K64 600 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 HHIPL2Q6UWX4 724 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 MIGA2Q7L4E1 593 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 UBE2Q1Q7Z7E8 422 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 ANKRD23Q86SG2 305 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.27■□□□□ 0.84
CUX2-202ENST00000397643 KLHDC4Q8TBB5 520 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 ZNF341Q9BYN7 854 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 MRS2Q9HD23 443 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 SRRDQ9UH36 339 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 KCNH4Q9UQ05 1017 aa20.27■□□□□ 0.84
CUX2-202ENST00000397643 MAST3O60307 1309 aa20.27■□□□□ 0.83
CUX2-202ENST00000397643 FRAT2O75474 233 aaPredicted RBP20.26■□□□□ 0.83
CUX2-202ENST00000397643 ECM2O94769 699 aaPredicted RBP20.26■□□□□ 0.83
CUX2-202ENST00000397643 ZNF112Q9UJU3 913 aa20.26■□□□□ 0.83
CUX2-202ENST00000397643 CCER2I3L3R5 266 aa20.25■□□□□ 0.83
CUX2-202ENST00000397643 OSBPP22059 807 aa20.25■□□□□ 0.83
CUX2-202ENST00000397643 PSMC4P43686 418 aa20.25■□□□□ 0.83
CUX2-202ENST00000397643 CHRDL2Q6WN34 429 aa20.25■□□□□ 0.83
CUX2-202ENST00000397643 MYH13Q9UKX3 1938 aa20.24■□□□□ 0.83
CUX2-202ENST00000397643 PDHXO00330 501 aa20.24■□□□□ 0.83
CUX2-202ENST00000397643 FAM151AQ8WW52 585 aa20.24■□□□□ 0.83
CUX2-202ENST00000397643 NFIAQ12857 509 aa20.23■□□□□ 0.83
CUX2-202ENST00000397643 PUM3Q15397 648 aaKnown RBP20.23■□□□□ 0.83
CUX2-202ENST00000397643 RBM27Q9P2N5 1060 aaKnown RBP20.23■□□□□ 0.83
CUX2-202ENST00000397643 DAGLAQ9Y4D2 1042 aa20.23■□□□□ 0.83
CUX2-202ENST00000397643 GRK4P32298 578 aa20.22■□□□□ 0.83
CUX2-202ENST00000397643 GJA8P48165 433 aa20.22■□□□□ 0.83
CUX2-202ENST00000397643 NOL9Q5SY16 702 aaKnown RBP20.22■□□□□ 0.83
CUX2-202ENST00000397643 PRO3102Q9H379 93 aa20.22■□□□□ 0.83
CUX2-202ENST00000397643 MYPNQ86TC9 1320 aa20.22■□□□□ 0.83
CUX2-202ENST00000397643 ATRNL1Q5VV63 1379 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 GJB1P08034 283 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 IFIT1P09914 478 aaKnown RBP20.21■□□□□ 0.83
CUX2-202ENST00000397643 BCRP11274 1271 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 DIXDC1Q155Q3 683 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 CDC42EP5Q6NZY7 148 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 FAM198AQ9UFP1 575 aa20.21■□□□□ 0.83
CUX2-202ENST00000397643 MGAMO43451 1857 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 FMNL1O95466 1100 aaPredicted RBP20.2■□□□□ 0.82
CUX2-202ENST00000397643 CCL5P13501 91 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 RFX5P48382 616 aaPredicted RBP20.2■□□□□ 0.82
CUX2-202ENST00000397643 TCP10Q12799 353 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 GPAT2Q6NUI2 795 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 MRPL50Q8N5N7 158 aaKnown RBP20.2■□□□□ 0.82
CUX2-202ENST00000397643 NKX2-3Q8TAU0 364 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 WDR66Q8TBY9 1149 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 RAET1EQ8TD07 263 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 LAMA3Q16787 3333 aa20.2■□□□□ 0.82
CUX2-202ENST00000397643 HOXD10P28358 340 aa20.19■□□□□ 0.82
CUX2-202ENST00000397643 PRKCZQ05513 592 aa20.19■□□□□ 0.82
CUX2-202ENST00000397643 DPF3Q92784 378 aa20.19■□□□□ 0.82
CUX2-202ENST00000397643 USP44Q9H0E7 712 aa20.19■□□□□ 0.82
CUX2-202ENST00000397643 CYP2C8P10632 490 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 PRDX5P30044 214 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 ZFPM1Q8IX07 1006 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 PARK7Q99497 189 aaKnown RBP20.18■□□□□ 0.82
CUX2-202ENST00000397643 ZNF521Q96K83 1311 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 RFX7Q2KHR2 1363 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 DOCK2Q92608 1830 aa20.18■□□□□ 0.82
CUX2-202ENST00000397643 AK9Q5TCS8 1911 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 EYA2O00167 538 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 CXCL11O14625 94 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 SLC5A1P13866 664 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 ATG9AQ7Z3C6 839 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 LPIN2Q92539 896 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 RNF208Q9H0X6 261 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 GABRQQ9UN88 632 aa20.17■□□□□ 0.82
CUX2-202ENST00000397643 PTPRFP10586 1907 aa20.16■□□□□ 0.82
CUX2-202ENST00000397643 PHF20L1A8MW92 1017 aa20.16■□□□□ 0.82
CUX2-202ENST00000397643 FCGRTP55899 365 aa20.16■□□□□ 0.82
CUX2-202ENST00000397643 A0A0G2JLL6 359 aaPredicted RBP20.15■□□□□ 0.82
CUX2-202ENST00000397643 PRRT2Q7Z6L0 340 aaPredicted RBP20.15■□□□□ 0.82
CUX2-202ENST00000397643 SLAIN1Q8ND83 568 aa20.15■□□□□ 0.82
CUX2-202ENST00000397643 U2AF1L4Q8WU68 220 aaKnown RBP20.15■□□□□ 0.82
CUX2-202ENST00000397643 HTATIP2Q9BUP3 242 aa20.15■□□□□ 0.82
CUX2-202ENST00000397643 UNC93B1Q9H1C4 597 aa20.15■□□□□ 0.82
CUX2-202ENST00000397643 PTPRCP08575 1304 aa20.15■□□□□ 0.82
CUX2-202ENST00000397643 SALL1Q9NSC2 1324 aa20.14■□□□□ 0.81
CUX2-202ENST00000397643 UBXN2AP68543 259 aa20.14■□□□□ 0.81
CUX2-202ENST00000397643 USP40Q9NVE5 1235 aa20.14■□□□□ 0.81
CUX2-202ENST00000397643 PHIPQ8WWQ0 1821 aa20.13■□□□□ 0.81
CUX2-202ENST00000397643 ZBTB7BO15156 539 aaPredicted RBP20.13■□□□□ 0.81
CUX2-202ENST00000397643 FARP2O94887 1054 aaPredicted RBP20.13■□□□□ 0.81
CUX2-202ENST00000397643 SH3BP5LQ7L8J4 393 aa20.13■□□□□ 0.81
CUX2-202ENST00000397643 SCYL3Q8IZE3 742 aa20.13■□□□□ 0.81
CUX2-202ENST00000397643 BIN2Q9UBW5 565 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms