RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 UBXN1Q04323 297 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 ZNF365Q70YC5 407 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 SULF1Q8IWU6 871 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 CD2APQ9Y5K6 639 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 ADGRF5Q8IZF2 1346 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 DDX39AO00148 427 aaKnown RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 PABPC4Q13310 644 aaKnown RBP eCLIP8.05□□□□□ -1.12
UPF2-203ENST00000397053 ERCC6LQ2NKX8 1250 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 MAEAQ7L5Y9 396 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 TRERF1Q96PN7 1200 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 RAB3IPQ96QF0 476 aaPredicted RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 RTEL1Q9NZ71 1219 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 DNAI1Q9UI46 699 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 MBD4O95243 580 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 PSMD6Q15008 389 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 TBC1D9Q6ZT07 1266 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 ARFGAP2Q8N6H7 521 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 WDR66Q8TBY9 1149 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 PLCH2O75038 1416 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 CFBP00751 764 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 TCP10Q12799 353 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 MCM6Q14566 821 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 SETDB1Q15047 1291 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 SDCCAG8Q86SQ7 713 aaPredicted RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 MEIS3Q99687 375 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 NKIRAS1Q9NYS0 192 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 TTC36A6NLP5 189 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 OATP04181 439 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 XRCC6P12956 609 aaKnown RBP eCLIP8.05□□□□□ -1.123e-6■□□□□ 11
UPF2-203ENST00000397053 HCLS1P14317 486 aaPredicted RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 VAV2P52735 878 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 SLC12A2P55011 1212 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 TNNC1P63316 161 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 BMP2KLQ5H9B9 411 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 C4orf50Q6ZRC1 276 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 CCDC129Q6ZRS4 1044 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 ARFGAP3Q9NP61 516 aa8.05□□□□□ -1.12
UPF2-203ENST00000397053 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.05□□□□□ -1.121e-6■■■□□ 16.3
UPF2-203ENST00000397053 RBM28Q9NW13 759 aaKnown RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 PA2G4Q9UQ80 394 aaKnown RBP8.05□□□□□ -1.12
UPF2-203ENST00000397053 ITIH3Q06033 890 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 GIMAP6Q6P9H5 292 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 GUCA1BQ9UMX6 200 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 PALM3A6NDB9 673 aaPredicted RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 CETN3O15182 167 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 PRPF6O94906 941 aaKnown RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 YARSP54577 528 aaKnown RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 FAM98CQ17RN3 349 aaKnown RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 SRGAP1Q7Z6B7 1085 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 CPLX4Q7Z7G2 160 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 NLRX1Q86UT6 975 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 ABI1Q8IZP0 508 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 MLXIPQ9HAP2 919 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 CALCOCO1Q9P1Z2 691 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 ANKFY1Q9P2R3 1169 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 CCDC171Q6TFL3 1326 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 ZSCAN22P10073 491 aaPredicted RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 PLCD1P51178 756 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 UTP14CQ5TAP6 766 aaKnown RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 IFT81Q8WYA0 676 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 FAM89AQ96GI7 184 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 ZKSCAN3Q9BRR0 538 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 KCNG1Q9UIX4 513 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 VWA3AA6NCI4 1184 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 HMGB1P1B2RPK0 211 aaPredicted RBP8.04□□□□□ -1.12
UPF2-203ENST00000397053 GCP02774 474 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 SKILP12757 684 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 MNAT1P51948 309 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 GNPTABQ3T906 1256 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 TTC22Q5TAA0 569 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 CASC4Q6P4E1 433 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 CERS3Q8IU89 383 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 NCAPGQ9BPX3 1015 aa8.04□□□□□ -1.12
UPF2-203ENST00000397053 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 RXRAP19793 462 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 XPAP23025 273 aaPredicted RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 ALDH1B1P30837 517 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 PPP1R2P41236 205 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 DCAF15Q66K64 600 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 METTL13Q8N6R0 699 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 DCPSQ96C86 337 aaKnown RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 PPANQ9NQ55 473 aaKnown RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 WIZO95785 1651 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 PCDH11XQ9BZA7 1347 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 PCDH11YQ9BZA8 1340 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 STK25O00506 426 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 P4HA1P13674 534 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 NCAPH2Q6IBW4 605 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 AOPEPQ8N6M6 819 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 SEC62Q99442 399 aaKnown RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 AS3MTQ9HBK9 375 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 ST7Q9NRC1 585 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 FAM135AQ9P2D6 1515 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 ADGRL1O94910 1474 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 IFT140Q96RY7 1462 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 ATXN8OSP0DMR3 200 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 FBLN1P23142 703 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 MAN1A1P33908 653 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 VWA3BQ502W6 1294 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 RSPH3Q86UC2 560 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms