RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 SLF2Q8IX21 1173 aa29.03■■■□□ 2.24
SHMT1-204ENST00000395682 IL1RAPL2Q9NP60 686 aa29.03■■■□□ 2.24
SHMT1-204ENST00000395682 USP40Q9NVE5 1235 aa29.03■■■□□ 2.24
SHMT1-204ENST00000395682 KIF23Q02241 960 aaPredicted RBP29.02■■■□□ 2.24
SHMT1-204ENST00000395682 MECOMQ03112 1051 aa29.02■■■□□ 2.24
SHMT1-204ENST00000395682 FAM83AQ86UY5 434 aa29.02■■■□□ 2.24
SHMT1-204ENST00000395682 CDAN1Q8IWY9 1227 aa29.02■■■□□ 2.24
SHMT1-204ENST00000395682 KIF1BPQ96EK5 621 aa29.02■■■□□ 2.24
SHMT1-204ENST00000395682 ZNF512BQ96KM6 892 aaPredicted RBP29.02■■■□□ 2.24
SHMT1-204ENST00000395682 SSC5DA1L4H1 1573 aa29.01■■■□□ 2.24
SHMT1-204ENST00000395682 RAB11FIP3O75154 756 aa29.01■■■□□ 2.23
SHMT1-204ENST00000395682 MAP3K11Q16584 847 aa29.01■■■□□ 2.23
SHMT1-204ENST00000395682 FAM163AQ96GL9 167 aaPredicted RBP29.01■■■□□ 2.23
SHMT1-204ENST00000395682 RAI14Q9P0K7 980 aa29.01■■■□□ 2.23
SHMT1-204ENST00000395682 THSD7BQ9C0I4 1608 aa29.01■■■□□ 2.23
SHMT1-204ENST00000395682 USP2O75604 605 aaPredicted RBP29■■■□□ 2.23
SHMT1-204ENST00000395682 CTCFP49711 727 aaPredicted RBP29■■■□□ 2.23
SHMT1-204ENST00000395682 LRP2BPQ9P2M1 347 aa29■■■□□ 2.23
SHMT1-204ENST00000395682 GAKO14976 1311 aa28.99■■■□□ 2.23
SHMT1-204ENST00000395682 CLASRPQ8N2M8 674 aaKnown RBP28.99■■■□□ 2.23
SHMT1-204ENST00000395682 IREB2P48200 963 aaKnown RBP28.98■■■□□ 2.23
SHMT1-204ENST00000395682 ZNF384Q8TF68 577 aa28.98■■■□□ 2.23
SHMT1-204ENST00000395682 NSUN4Q96CB9 384 aaKnown RBP28.98■■■□□ 2.23
SHMT1-204ENST00000395682 SLC10A4Q96EP9 437 aa28.98■■■□□ 2.23
SHMT1-204ENST00000395682 BCL11AQ9H165 835 aa28.98■■■□□ 2.23
SHMT1-204ENST00000395682 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.98■■■□□ 2.23
SHMT1-204ENST00000395682 LDHCP07864 332 aa28.97■■■□□ 2.23
SHMT1-204ENST00000395682 GSTO1P78417 241 aa28.97■■■□□ 2.23
SHMT1-204ENST00000395682 MYH2Q9UKX2 1941 aa28.96■■■□□ 2.23
SHMT1-204ENST00000395682 CYP2E1P05181 493 aaPredicted RBP28.96■■■□□ 2.23
SHMT1-204ENST00000395682 ZAP70P43403 619 aa28.96■■■□□ 2.23
SHMT1-204ENST00000395682 NFIAQ12857 509 aa28.96■■■□□ 2.23
SHMT1-204ENST00000395682 FAM151AQ8WW52 585 aa28.96■■■□□ 2.23
SHMT1-204ENST00000395682 MROH7-TTC4A0A0A0MT08 1334 aa28.95■■■□□ 2.23
SHMT1-204ENST00000395682 UNCXA6NJT0 531 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 BTDP43251 543 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 TCP10Q12799 353 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 COL13A1Q5TAT6 717 aaPredicted RBP28.95■■■□□ 2.22
SHMT1-204ENST00000395682 CLMNQ96JQ2 1002 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 CSRNP1Q96S65 589 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 FAM198AQ9UFP1 575 aa28.95■■■□□ 2.22
SHMT1-204ENST00000395682 GPR75-ASB3A0A0A6YYF3 556 aa28.94■■■□□ 2.22
SHMT1-204ENST00000395682 IFIT2P09913 472 aaKnown RBP28.94■■■□□ 2.22
SHMT1-204ENST00000395682 LBX1P52954 281 aa28.94■■■□□ 2.22
SHMT1-204ENST00000395682 CA12O43570 354 aa28.93■■■□□ 2.22
SHMT1-204ENST00000395682 HSPA8P11142 646 aaKnown RBP28.93■■■□□ 2.22
SHMT1-204ENST00000395682 MKRN3Q13064 507 aaKnown RBP28.93■■■□□ 2.22
SHMT1-204ENST00000395682 REM2Q8IYK8 340 aaPredicted RBP28.93■■■□□ 2.22
SHMT1-204ENST00000395682 ANKRD13AQ8IZ07 590 aa28.93■■■□□ 2.22
SHMT1-204ENST00000395682 HOOK2Q96ED9 719 aa28.93■■■□□ 2.22
SHMT1-204ENST00000395682 AKAP11Q9UKA4 1901 aa28.92■■■□□ 2.22
SHMT1-204ENST00000395682 CRBNQ96SW2 442 aa28.92■■■□□ 2.22
SHMT1-204ENST00000395682 PIH1D3Q9NQM4 214 aaKnown RBP28.92■■■□□ 2.22
SHMT1-204ENST00000395682 TSKSQ9UJT2 592 aa28.92■■■□□ 2.22
SHMT1-204ENST00000395682 RGS3P49796 1198 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 SPRYD7Q5W111 196 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 NAA16Q6N069 864 aaPredicted RBP28.91■■■□□ 2.22
SHMT1-204ENST00000395682 ZFPM1Q8IX07 1006 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 IDI2Q9BXS1 227 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 PRDM10Q9NQV6 1147 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 PCDHB15Q9Y5E8 787 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 NDUFB9Q9Y6M9 179 aa28.91■■■□□ 2.22
SHMT1-204ENST00000395682 MAP3K9P80192 1104 aa28.9■■■□□ 2.22
SHMT1-204ENST00000395682 LRRCC1Q9C099 1032 aa28.9■■■□□ 2.22
SHMT1-204ENST00000395682 DCTPP1Q9H773 170 aa28.9■■■□□ 2.22
SHMT1-204ENST00000395682 RPAP1Q9BWH6 1393 aaPredicted RBP28.89■■■□□ 2.22
SHMT1-204ENST00000395682 ENTPD3O75355 529 aa28.89■■■□□ 2.22
SHMT1-204ENST00000395682 MIGA2Q7L4E1 593 aa28.89■■■□□ 2.22
SHMT1-204ENST00000395682 WDHD1O75717 1129 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-204ENST00000395682 RHBDL3P58872 404 aa28.88■■■□□ 2.21
SHMT1-204ENST00000395682 DCAF15Q66K64 600 aa28.88■■■□□ 2.21
SHMT1-204ENST00000395682 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.88■■■□□ 2.21
SHMT1-204ENST00000395682 RNF186Q9NXI6 227 aa28.88■■■□□ 2.21
SHMT1-204ENST00000395682 SMARCA5O60264 1052 aaPredicted RBP28.87■■■□□ 2.21
SHMT1-204ENST00000395682 IGSF3O75054 1194 aa28.87■■■□□ 2.21
SHMT1-204ENST00000395682 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.87■■■□□ 2.21
SHMT1-204ENST00000395682 WNK4Q96J92 1243 aa28.87■■■□□ 2.21
SHMT1-204ENST00000395682 NOL10Q9BSC4 688 aaKnown RBP28.87■■■□□ 2.21
SHMT1-204ENST00000395682 ELP3Q9H9T3 547 aa28.87■■■□□ 2.21
SHMT1-204ENST00000395682 TRPA1O75762 1119 aa28.86■■■□□ 2.21
SHMT1-204ENST00000395682 IDH1O75874 414 aaKnown RBP28.86■■■□□ 2.21
SHMT1-204ENST00000395682 MAP4K4O95819 1239 aaPredicted RBP28.86■■■□□ 2.21
SHMT1-204ENST00000395682 TM4SF4P48230 202 aa28.86■■■□□ 2.21
SHMT1-204ENST00000395682 PICALMQ13492 652 aa28.86■■■□□ 2.21
SHMT1-204ENST00000395682 ANTXR1Q9H6X2 564 aa28.86■■■□□ 2.21
SHMT1-204ENST00000395682 DDX4Q9NQI0 724 aaKnown RBP28.86■■■□□ 2.21
SHMT1-204ENST00000395682 ZBTB48P10074 688 aaPredicted RBP28.85■■■□□ 2.21
SHMT1-204ENST00000395682 VGLL4Q14135 290 aa28.85■■■□□ 2.21
SHMT1-204ENST00000395682 ZNF341Q9BYN7 854 aa28.85■■■□□ 2.21
SHMT1-204ENST00000395682 CSADQ9Y600 493 aa28.85■■■□□ 2.21
SHMT1-204ENST00000395682 BAG3O95817 575 aa28.84■■■□□ 2.21
SHMT1-204ENST00000395682 ZSCAN29Q8IWY8 852 aaPredicted RBP28.84■■■□□ 2.21
SHMT1-204ENST00000395682 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.84■■■□□ 2.21
SHMT1-204ENST00000395682 WRNIP1Q96S55 665 aa28.84■■■□□ 2.21
SHMT1-204ENST00000395682 SAGE1Q9NXZ1 904 aa28.84■■■□□ 2.21
SHMT1-204ENST00000395682 AATFQ9NY61 560 aaKnown RBP eCLIP28.84■■■□□ 2.21
SHMT1-204ENST00000395682 RFX7Q2KHR2 1363 aa28.84■■■□□ 2.21
SHMT1-204ENST00000395682 SREBF2Q12772 1141 aa28.83■■■□□ 2.21
SHMT1-204ENST00000395682 SH3BP5LQ7L8J4 393 aa28.83■■■□□ 2.21
SHMT1-204ENST00000395682 ADGRA1Q86SQ6 560 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms