RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GPR75-ASB3A0A0A6YYF3 556 aa26.46■■□□□ 1.83
CLN3-207ENST00000395653 CACNB3P54284 484 aa26.46■■□□□ 1.83
CLN3-207ENST00000395653 BTDP43251 543 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 HUNKP57058 714 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 TTF1Q15361 905 aaPredicted RBP26.45■■□□□ 1.82
CLN3-207ENST00000395653 SUPT20HL1Q3ZLR7 823 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 NAA16Q6N069 864 aaPredicted RBP26.45■■□□□ 1.82
CLN3-207ENST00000395653 ANTXR1Q9H6X2 564 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 ECHDC1Q9NTX5 307 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 USP40Q9NVE5 1235 aa26.45■■□□□ 1.82
CLN3-207ENST00000395653 DOCK2Q92608 1830 aa26.44■■□□□ 1.82
CLN3-207ENST00000395653 GPATCH3Q96I76 525 aa26.44■■□□□ 1.82
CLN3-207ENST00000395653 TEPSINQ96N21 525 aa26.44■■□□□ 1.82
CLN3-207ENST00000395653 SSC5DA1L4H1 1573 aa26.44■■□□□ 1.82
CLN3-207ENST00000395653 RPAP1Q9BWH6 1393 aaPredicted RBP26.43■■□□□ 1.82
CLN3-207ENST00000395653 IDH1O75874 414 aaKnown RBP26.43■■□□□ 1.82
CLN3-207ENST00000395653 TMED8Q6PL24 325 aaPredicted RBP26.43■■□□□ 1.82
CLN3-207ENST00000395653 SMC5Q8IY18 1101 aa26.43■■□□□ 1.82
CLN3-207ENST00000395653 DNAJC2Q99543 621 aaKnown RBP26.43■■□□□ 1.82
CLN3-207ENST00000395653 ZBTB47Q9UFB7 747 aaPredicted RBP26.43■■□□□ 1.82
CLN3-207ENST00000395653 MAP4K4O95819 1239 aaPredicted RBP26.42■■□□□ 1.82
CLN3-207ENST00000395653 MAP3K12Q12852 859 aa26.42■■□□□ 1.82
CLN3-207ENST00000395653 NBPF12Q5TAG4 269 aaPredicted RBP26.42■■□□□ 1.82
CLN3-207ENST00000395653 ANKRD45Q5TZF3 282 aa26.42■■□□□ 1.82
CLN3-207ENST00000395653 HAUS7Q99871 368 aa26.42■■□□□ 1.82
CLN3-207ENST00000395653 TMEM39BQ9GZU3 492 aa26.42■■□□□ 1.82
CLN3-207ENST00000395653 BOLA2Q9H3K6 86 aa26.42■■□□□ 1.82
CLN3-207ENST00000395653 MYO5AQ9Y4I1 1855 aaKnown RBP26.42■■□□□ 1.82
CLN3-207ENST00000395653 VEGFBP49765 207 aa26.41■■□□□ 1.82
CLN3-207ENST00000395653 NFIAQ12857 509 aa26.41■■□□□ 1.82
CLN3-207ENST00000395653 IDI2Q9BXS1 227 aa26.41■■□□□ 1.82
CLN3-207ENST00000395653 RFX7Q2KHR2 1363 aa26.41■■□□□ 1.82
CLN3-207ENST00000395653 GOLIM4O00461 696 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 ECE1P42892 770 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 RHBDL3P58872 404 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 TTLL12Q14166 644 aaPredicted RBP26.4■■□□□ 1.82
CLN3-207ENST00000395653 PAXIP1Q6ZW49 1069 aaPredicted RBP26.4■■□□□ 1.82
CLN3-207ENST00000395653 JMYQ8N9B5 988 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 FAM151AQ8WW52 585 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 PAG1Q9NWQ8 432 aa26.4■■□□□ 1.82
CLN3-207ENST00000395653 PPP1R12BO60237 982 aaPredicted RBP26.39■■□□□ 1.82
CLN3-207ENST00000395653 IGHDP01880 384 aa26.39■■□□□ 1.82
CLN3-207ENST00000395653 ARMC9Q7Z3E5 817 aa26.39■■□□□ 1.82
CLN3-207ENST00000395653 CAPNS2Q96L46 248 aa26.39■■□□□ 1.82
CLN3-207ENST00000395653 NOL10Q9BSC4 688 aaKnown RBP26.39■■□□□ 1.82
CLN3-207ENST00000395653 FAM198AQ9UFP1 575 aa26.39■■□□□ 1.82
CLN3-207ENST00000395653 TTC41PQ6P2S7 1318 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 BAG3O95817 575 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 CYP4F22Q6NT55 531 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 RGMBQ6NW40 437 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 MOB2Q70IA6 237 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 CDAN1Q8IWY9 1227 aa26.39■■□□□ 1.81
CLN3-207ENST00000395653 WDR33Q9C0J8 1336 aaKnown RBP26.38■■□□□ 1.81
CLN3-207ENST00000395653 ENTPD3O75355 529 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 WDHD1O75717 1129 aaPredicted RBP26.38■■□□□ 1.81
CLN3-207ENST00000395653 CYP7A1P22680 504 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 PPP4CP60510 307 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 MAP3K11Q16584 847 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 ADGRA1Q86SQ6 560 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 MAGEB6Q8N7X4 407 aa26.38■■□□□ 1.81
CLN3-207ENST00000395653 PRKG1Q13976 671 aa26.37■■□□□ 1.81
CLN3-207ENST00000395653 HOOK2Q96ED9 719 aa26.37■■□□□ 1.81
CLN3-207ENST00000395653 EDC3Q96F86 508 aaKnown RBP26.37■■□□□ 1.81
CLN3-207ENST00000395653 AATFQ9NY61 560 aaKnown RBP eCLIP26.37■■□□□ 1.81
CLN3-207ENST00000395653 ANGEL1Q9UNK9 670 aaKnown RBP26.37■■□□□ 1.81
CLN3-207ENST00000395653 UBE2Q2LH0YL09 131 aa26.36■■□□□ 1.81
CLN3-207ENST00000395653 NPM3O75607 178 aaKnown RBP26.36■■□□□ 1.81
CLN3-207ENST00000395653 PLCG2P16885 1265 aa26.36■■□□□ 1.81
CLN3-207ENST00000395653 MX1P20591 662 aa26.36■■□□□ 1.81
CLN3-207ENST00000395653 RGS3P49796 1198 aa26.36■■□□□ 1.81
CLN3-207ENST00000395653 TCP10Q12799 353 aa26.36■■□□□ 1.81
CLN3-207ENST00000395653 OTUD7AQ8TE49 926 aaPredicted RBP26.36■■□□□ 1.81
CLN3-207ENST00000395653 SALL3Q9BXA9 1300 aa26.35■■□□□ 1.81
CLN3-207ENST00000395653 THSD7BQ9C0I4 1608 aa26.35■■□□□ 1.81
CLN3-207ENST00000395653 ERC2O15083 957 aa26.35■■□□□ 1.81
CLN3-207ENST00000395653 LDLRAD1Q5T700 205 aa26.35■■□□□ 1.81
CLN3-207ENST00000395653 FZD1Q9UP38 647 aa26.35■■□□□ 1.81
CLN3-207ENST00000395653 UNCXA6NJT0 531 aa26.34■■□□□ 1.81
CLN3-207ENST00000395653 ZNF157P51786 506 aaPredicted RBP26.34■■□□□ 1.81
CLN3-207ENST00000395653 SLC9C2Q5TAH2 1124 aa26.34■■□□□ 1.81
CLN3-207ENST00000395653 TSHZ3Q63HK5 1081 aa26.34■■□□□ 1.81
CLN3-207ENST00000395653 CERS3Q8IU89 383 aa26.34■■□□□ 1.81
CLN3-207ENST00000395653 CCDC102AQ96A19 550 aa26.34■■□□□ 1.81
CLN3-207ENST00000395653 USP2O75604 605 aaPredicted RBP26.33■■□□□ 1.81
CLN3-207ENST00000395653 PDE6AP16499 860 aa26.33■■□□□ 1.81
CLN3-207ENST00000395653 IREB2P48200 963 aaKnown RBP26.33■■□□□ 1.81
CLN3-207ENST00000395653 GRM1Q13255 1194 aa26.33■■□□□ 1.81
CLN3-207ENST00000395653 TEX11Q8IYF3 940 aa26.33■■□□□ 1.81
CLN3-207ENST00000395653 PI4K2BQ8TCG2 481 aa26.33■■□□□ 1.81
CLN3-207ENST00000395653 DDX4Q9NQI0 724 aaKnown RBP26.33■■□□□ 1.81
CLN3-207ENST00000395653 GLRX3O76003 335 aaKnown RBP26.32■■□□□ 1.8
CLN3-207ENST00000395653 PICALMQ13492 652 aa26.32■■□□□ 1.8
CLN3-207ENST00000395653 B4GALNT3Q6L9W6 998 aa26.32■■□□□ 1.8
CLN3-207ENST00000395653 ZFPM1Q8IX07 1006 aa26.32■■□□□ 1.8
CLN3-207ENST00000395653 SH3RF3Q8TEJ3 882 aaPredicted RBP26.32■■□□□ 1.8
CLN3-207ENST00000395653 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.32■■□□□ 1.82e-6■■■■■ 40.7
CLN3-207ENST00000395653 FAM155AB1AL88 458 aaPredicted RBP26.31■■□□□ 1.8
CLN3-207ENST00000395653 SLC10A3P09131 477 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 LNPKQ9C0E8 428 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 COL2A1P02458 1487 aaPredicted RBP26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms