RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SLC9A9Q8IVB4 645 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 RBM15Q96T37 977 aaKnown RBP eCLIP1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 KRTAP2-2Q9BYT5 123 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 CEP126Q9P2H0 1117 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 TSC22D4Q9Y3Q8 395 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 H3BRJ5 948 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 AP1G2O75843 785 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 CLK2P49760 499 aaKnown RBP1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 MRPS21P82921 87 aaKnown RBP1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 DPTQ07507 201 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 CNKSR3Q6P9H4 555 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 DYMQ7RTS9 669 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 USP33Q8TEY7 942 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 BBXQ8WY36 941 aaPredicted RBP1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 USP26Q9BXU7 913 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 ZNF552Q9H707 407 aaPredicted RBP1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 C11orf16Q9NQ32 467 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 CHMP3Q9Y3E7 222 aa1.48□□□□□ -2.17
RNU6-540P-201ENST00000384622 DLGAP3O95886 979 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 ADH5P11766 374 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 SOX18P35713 384 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 ATP11AP98196 1134 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 LCE1AQ5T7P2 110 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 PAPD7Q5XG87 772 aaKnown RBP1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 ADAMTSL4Q6UY14 1074 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 TP53I13Q8NBR0 393 aaPredicted RBP1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 SPACA7Q96KW9 195 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 NECAB3Q96P71 396 aaPredicted RBP1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 SLC6A17Q9H1V8 727 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 EPB41L4AQ9HCS5 686 aaPredicted RBP1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 FAM105AQ9NUU6 356 aa1.47□□□□□ -2.17
RNU6-540P-201ENST00000384622 A0A087X1B8 175 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 KRTAP9-6A8MVA2 160 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 PTPRAP18433 802 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 CNR2P34972 360 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 SLURP1P55000 103 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 C19orf57Q0VDD7 668 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 NR1H3Q13133 447 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 CDK5R2Q13319 367 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 NT5DC1Q5TFE4 455 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 IER5Q5VY09 327 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 TTC6Q86TZ1 520 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 ZNF341Q9BYN7 854 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 RNF32Q9H0A6 362 aa1.46□□□□□ -2.18
RNU6-540P-201ENST00000384622 MMP20O60882 483 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 INPP5BP32019 993 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 ASPAP45381 313 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 HIRAP54198 1017 aaPredicted RBP1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 ERVFC1P60507 584 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 ZC3H6P61129 1189 aaKnown RBP1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 NPAS4Q8IUM7 802 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 DDX1Q92499 740 aaKnown RBP1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 WASF1Q92558 559 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 PWWP2AQ96N64 755 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 CDK5RAP1Q96SZ6 601 aaKnown RBP1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 ST6GALNAC2Q9UJ37 374 aa1.45□□□□□ -2.18
RNU6-540P-201ENST00000384622 NPIPB8E9PQR5 432 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 TGFBR3LH3BV60 316 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 FBLN1P23142 703 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 PDE6BP35913 854 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 PSMA6P60900 246 aaKnown RBP1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 GRM7Q14831 915 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 CDSNQ15517 529 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 AMHR2Q16671 573 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 TREML1Q86YW5 311 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 ALPK1Q96QP1 1244 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 RASSF4Q9H2L5 321 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 POLR3EQ9NVU0 708 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 DMGDHQ9UI17 866 aaKnown RBP1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 DUSP10Q9Y6W6 482 aa1.44□□□□□ -2.18
RNU6-540P-201ENST00000384622 N4BP3O15049 544 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 LEFTY1O75610 366 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 IDH3AP50213 366 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 EPHB3P54753 998 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 MICALCLQ6ZW33 695 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 FAM129CQ86XR2 697 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 SPACA3Q8IXA5 215 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 ALDH16A1Q8IZ83 802 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 TNS4Q8IZW8 715 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 SIRT5Q9NXA8 310 aa1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 MBD1Q9UIS9 605 aaPredicted RBP1.43□□□□□ -2.18
RNU6-540P-201ENST00000384622 ERVV-2B6SEH9 535 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 INO80B-WBP1J3KQ70 363 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 XYLBO75191 536 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 HPXP02790 462 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 USP17L8P0C7I0 530 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 HOXB6P17509 224 aaKnown RBP1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 FBLP22087 321 aaKnown RBP1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 TRHRP34981 398 aaPredicted RBP1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 ARSDP51689 593 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 HK2P52789 917 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 SRSF3P84103 164 aaKnown RBP1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 MVKQ03426 396 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 ABHD18Q0P651 414 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 PTK7Q13308 1070 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 HGSNATQ68CP4 663 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 TMEFF1Q8IYR6 380 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 C1orf127Q8N9H9 656 aa1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 SERBP1Q8NC51 408 aaKnown RBP eCLIP1.42□□□□□ -2.18
RNU6-540P-201ENST00000384622 TRIM34Q9BYJ4 488 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms