RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TMX3Q96JJ7 454 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 TLDC2A0PJX2 215 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 KMT5BQ4FZB7 885 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 DNAJC25Q9H1X3 360 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 KRT9P35527 623 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 ZNF710Q8N1W2 664 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 MAGEB6Q8N7X4 407 aa13.95□□□□□ -0.18
VPS13A-204ENST00000376634 TRIM6Q9C030 488 aaPredicted RBP13.94□□□□□ -0.18
VPS13A-204ENST00000376634 RAB3IPQ96QF0 476 aaPredicted RBP13.94□□□□□ -0.18
VPS13A-204ENST00000376634 FNBP1Q96RU3 617 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 PPFIA2O75334 1257 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 C10orf67Q8IYJ2 551 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 PARP1P09874 1014 aaKnown RBP13.94□□□□□ -0.18
VPS13A-204ENST00000376634 NBPF8Q3BBV2 869 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 PRR16Q569H4 304 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 ARHGAP24Q8N264 748 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 BIRC2Q13490 618 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 TRPC3Q13507 836 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 AFAP1L1Q8TED9 768 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 PHF8Q9UPP1 1060 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 RFX1P22670 979 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 CCT6AP40227 531 aaKnown RBP13.94□□□□□ -0.18
VPS13A-204ENST00000376634 CLNS1AP54105 237 aaKnown RBP13.94□□□□□ -0.18
VPS13A-204ENST00000376634 ELP1O95163 1332 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 NCAPGQ9BPX3 1015 aa13.94□□□□□ -0.18
VPS13A-204ENST00000376634 CNNM4Q6P4Q7 775 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 CCDC89Q8N998 374 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 KARSQ15046 597 aaKnown RBP13.93□□□□□ -0.18
VPS13A-204ENST00000376634 PICK1Q9NRD5 415 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 ANKRD12Q6UB98 2062 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 SP4Q02446 784 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 FAM160A1Q05DH4 1040 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 IQUBQ8NA54 791 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 BIN2Q9UBW5 565 aaPredicted RBP13.93□□□□□ -0.18
VPS13A-204ENST00000376634 WASLO00401 505 aaPredicted RBP13.93□□□□□ -0.18
VPS13A-204ENST00000376634 FOXO3O43524 673 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 ZNF131P52739 623 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 MBIPQ9NS73 344 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 MSH6P52701 1360 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 SLC9C2Q5TAH2 1124 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 IL16Q14005 1332 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 SYNRGQ9UMZ2 1314 aa13.93□□□□□ -0.18
VPS13A-204ENST00000376634 RBM8AQ9Y5S9 174 aaKnown RBP13.93□□□□□ -0.18
VPS13A-204ENST00000376634 AKR1B15C9JRZ8 316 aaPredicted RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 GRM8O00222 908 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 DNM1Q05193 864 aaKnown RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 SH2D4AQ9H788 454 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 MCM9Q9NXL9 1143 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 TRIM14Q14142 442 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 POTEDQ86YR6 584 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 WDR7Q9Y4E6 1490 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 ARHGEF2Q92974 986 aaKnown RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 ANKRD36BQ8N2N9 1353 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 CALUO43852 315 aaPredicted RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 F13A1P00488 732 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 DDX27Q96GQ7 796 aaKnown RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 SDSP20132 328 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 ATP2A3Q93084 1043 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 NOX5Q96PH1 765 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 PPP1R12CQ9BZL4 782 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 IFNKQ9P0W0 207 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 IQSEC3Q9UPP2 1182 aaPredicted RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 EMILIN1Q9Y6C2 1016 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 CCNT1O60563 726 aaKnown RBP13.92□□□□□ -0.18
VPS13A-204ENST00000376634 PLCB4Q15147 1175 aa13.92□□□□□ -0.18
VPS13A-204ENST00000376634 IFT20Q8IY31 132 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 DACT1Q9NYF0 836 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 PPP2R3AQ06190 1150 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 BRDTQ58F21 947 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 UTP14CQ5TAP6 766 aaKnown RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 CCDC186Q7Z3E2 898 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 PLCB1Q9NQ66 1216 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 HARSP12081 509 aaKnown RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 NLRP3Q96P20 1036 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 CASC4Q6P4E1 433 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 SV2BQ7L1I2 683 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 RNF168Q8IYW5 571 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 NSMCE1Q8WV22 266 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 NAP1L4Q99733 375 aaKnown RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 SUDS3Q9H7L9 328 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 JDP2Q8WYK2 163 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 STRN3Q13033 797 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 BAG1Q99933 345 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 IRX5P78411 483 aaPredicted RBP13.91□□□□□ -0.18
VPS13A-204ENST00000376634 NOD1Q9Y239 953 aa13.91□□□□□ -0.18
VPS13A-204ENST00000376634 GOLGA6CA6NDK9 693 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 GOLGA6BA6NDN3 693 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 NOP56O00567 594 aaKnown RBP13.9□□□□□ -0.18
VPS13A-204ENST00000376634 LDHBP07195 334 aaKnown RBP13.9□□□□□ -0.18
VPS13A-204ENST00000376634 GOLGA6DP0CG33 693 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 PSMD6Q15008 389 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 GOLGA6AQ9NYA3 693 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 ABCC1P33527 1531 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 VWA3AA6NCI4 1184 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 C8orf74Q6P047 294 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 KRBA2Q6ZNG9 492 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 VCX3AQ9NNX9 186 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 A6NNZ2 444 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 IL15P40933 162 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms