RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CNOT7Q9UIV1 285 aaKnown RBP16.96■□□□□ 0.3
HMGA1-203ENST00000374116 HIP1O00291 1037 aa16.95■□□□□ 0.3
HMGA1-203ENST00000374116 GOLIM4O00461 696 aa16.95■□□□□ 0.3
HMGA1-203ENST00000374116 KCNB2Q92953 911 aa16.95■□□□□ 0.3
HMGA1-203ENST00000374116 GMLQ99445 158 aa16.95■□□□□ 0.3
HMGA1-203ENST00000374116 PIH1D3Q9NQM4 214 aaKnown RBP16.95■□□□□ 0.3
HMGA1-203ENST00000374116 ADAMTSL1Q8N6G6 1762 aa16.95■□□□□ 0.3
HMGA1-203ENST00000374116 SMAP1Q8IYB5 467 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-203ENST00000374116 GPRC5DQ9NZD1 345 aa16.94■□□□□ 0.3
HMGA1-203ENST00000374116 SEMA3EO15041 775 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 CHGBP05060 677 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 TBC1D10BQ4KMP7 808 aaPredicted RBP16.93■□□□□ 0.3
HMGA1-203ENST00000374116 WDR66Q8TBY9 1149 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 ZNF512BQ96KM6 892 aaPredicted RBP16.93■□□□□ 0.3
HMGA1-203ENST00000374116 TTF2Q9UNY4 1162 aaKnown RBP16.93■□□□□ 0.3
HMGA1-203ENST00000374116 SNX14Q9Y5W7 946 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 USP17L8P0C7I0 530 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 DIXDC1Q155Q3 683 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 SLFNL1Q499Z3 407 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 AGBL3Q8NEM8 1001 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 LRP2BPQ9P2M1 347 aa16.93■□□□□ 0.3
HMGA1-203ENST00000374116 POTEIP0CG38 1075 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 POTEJP0CG39 1038 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 PKP1Q13835 747 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 KLHL40Q2TBA0 621 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 GAS2L3Q86XJ1 694 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 TRPM4Q8TD43 1214 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 HAUS7Q99871 368 aa16.92■□□□□ 0.3
HMGA1-203ENST00000374116 UPF3BQ9BZI7 483 aaKnown RBP16.92■□□□□ 0.3
HMGA1-203ENST00000374116 GPBP1L1Q9HC44 474 aaPredicted RBP16.92■□□□□ 0.3
HMGA1-203ENST00000374116 SCAF8Q9UPN6 1271 aaKnown RBP16.92■□□□□ 0.3
HMGA1-203ENST00000374116 RFX7Q2KHR2 1363 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 IDH1O75874 414 aaKnown RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 LDHBP07195 334 aaKnown RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 LMOD1P29536 600 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 PTH1RQ03431 593 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 RASEFQ8IZ41 740 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 ZNF384Q8TF68 577 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 TBC1D22AQ8WUA7 517 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 L3MBTL3Q96JM7 780 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 PAG1Q9NWQ8 432 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 RAI14Q9P0K7 980 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 ZDHHC9Q9Y397 364 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 RBM5P52756 815 aaKnown RBP eCLIP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 NMIQ13287 307 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 EAPPQ56P03 285 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-203ENST00000374116 MCTP1Q6DN14 999 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 DPF2Q92785 391 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 HACL1Q9UJ83 578 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 WDR90Q96KV7 1748 aa16.91■□□□□ 0.3
HMGA1-203ENST00000374116 ASTN2O75129 1339 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-203ENST00000374116 MYO3BQ8WXR4 1341 aa16.9■□□□□ 0.3
HMGA1-203ENST00000374116 RPS12P25398 132 aaKnown RBP16.9■□□□□ 0.3
HMGA1-203ENST00000374116 EPHX2P34913 555 aa16.9■□□□□ 0.3
HMGA1-203ENST00000374116 HIRAP54198 1017 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-203ENST00000374116 MECOMQ03112 1051 aa16.9■□□□□ 0.3
HMGA1-203ENST00000374116 NECTIN1Q15223 517 aa16.9■□□□□ 0.3
HMGA1-203ENST00000374116 OGFOD1Q8N543 542 aa16.9■□□□□ 0.3
HMGA1-203ENST00000374116 CCDC171Q6TFL3 1326 aa16.89■□□□□ 0.3
HMGA1-203ENST00000374116 SALL1Q9NSC2 1324 aa16.89■□□□□ 0.3
HMGA1-203ENST00000374116 H7C1D1 291 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 TICAM2Q86XR7 235 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 MAP4K1Q92918 833 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 TTC14Q96N46 770 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 TAF1DQ9H5J8 278 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 MYOZ2Q9NPC6 264 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 DDX49Q9Y6V7 483 aaKnown RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 PDS5AQ29RF7 1337 aaKnown RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 A0A0D9SFI3 127 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 VEGFAP15692 232 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 FKBP1AP62942 108 aaKnown RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 NBPF9Q3BBW0 867 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 CFAP100Q494V2 611 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 DZIP1Q86YF9 867 aaKnown RBP16.89■□□□□ 0.29
HMGA1-203ENST00000374116 FSD1Q9BTV5 496 aa16.89■□□□□ 0.29
HMGA1-203ENST00000374116 ZNF500O60304 480 aaPredicted RBP16.88■□□□□ 0.29
HMGA1-203ENST00000374116 BRD1O95696 1058 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 CRKP46108 304 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 ADGRA1Q86SQ6 560 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 NSUN4Q96CB9 384 aaKnown RBP16.88■□□□□ 0.29
HMGA1-203ENST00000374116 TM6SF1Q9BZW5 370 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 LMBRD1Q9NUN5 540 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 MYH2Q9UKX2 1941 aa16.88■□□□□ 0.29
HMGA1-203ENST00000374116 SCN4AP35499 1836 aa16.87■□□□□ 0.29
HMGA1-203ENST00000374116 ZNF280AP59817 542 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-203ENST00000374116 KIF4BQ2VIQ3 1234 aa16.87■□□□□ 0.29
HMGA1-203ENST00000374116 NOL8Q76FK4 1167 aaKnown RBP16.87■□□□□ 0.29
HMGA1-203ENST00000374116 MAGEB6Q8N7X4 407 aa16.87■□□□□ 0.29
HMGA1-203ENST00000374116 PRMT6Q96LA8 375 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-203ENST00000374116 HDAC9Q9UKV0 1011 aa16.87■□□□□ 0.29
HMGA1-203ENST00000374116 IQCA1LA6NCM1 817 aa16.86■□□□□ 0.29
HMGA1-203ENST00000374116 ADARB2Q9NS39 739 aaKnown RBP16.86■□□□□ 0.29
HMGA1-203ENST00000374116 LIMCH1Q9UPQ0 1083 aa16.86■□□□□ 0.29
HMGA1-203ENST00000374116 DOCK2Q92608 1830 aa16.86■□□□□ 0.29
HMGA1-203ENST00000374116 WNT10BO00744 389 aa16.86■□□□□ 0.29
HMGA1-203ENST00000374116 SLC9C2Q5TAH2 1124 aa16.86■□□□□ 0.29
HMGA1-203ENST00000374116 SPTY2D1Q68D10 685 aaPredicted RBP16.86■□□□□ 0.29
HMGA1-203ENST00000374116 DLK2Q6UY11 383 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms