RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NOM1Q5C9Z4 860 aaKnown RBP26.81■■□□□ 1.88
CCDC28B-201ENST00000373602 ELP3Q9H9T3 547 aa26.81■■□□□ 1.88
CCDC28B-201ENST00000373602 LAMB1P07942 1786 aa26.81■■□□□ 1.88
CCDC28B-201ENST00000373602 ALDH1A1P00352 501 aa26.8■■□□□ 1.88
CCDC28B-201ENST00000373602 IFNL1Q8IU54 200 aa26.8■■□□□ 1.88
CCDC28B-201ENST00000373602 HOOK2Q96ED9 719 aa26.8■■□□□ 1.88
CCDC28B-201ENST00000373602 C1orf115Q9H7X2 142 aa26.8■■□□□ 1.88
CCDC28B-201ENST00000373602 FAM151AQ8WW52 585 aa26.79■■□□□ 1.88
CCDC28B-201ENST00000373602 OPTNQ96CV9 577 aa26.79■■□□□ 1.88
CCDC28B-201ENST00000373602 GPR25O00155 361 aa26.78■■□□□ 1.88
CCDC28B-201ENST00000373602 VGLL4Q14135 290 aa26.78■■□□□ 1.88
CCDC28B-201ENST00000373602 ZNF296Q8WUU4 475 aaPredicted RBP26.78■■□□□ 1.88
CCDC28B-201ENST00000373602 USP40Q9NVE5 1235 aa26.78■■□□□ 1.88
CCDC28B-201ENST00000373602 ABCF2Q9UG63 623 aa26.78■■□□□ 1.88
CCDC28B-201ENST00000373602 GAKO14976 1311 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 CCDC85CA6NKD9 419 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 IGF2BP3O00425 579 aaKnown RBP eCLIP26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 NFIAQ12857 509 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 GORABQ5T7V8 394 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 SPTY2D1Q68D10 685 aaPredicted RBP26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 CTU1Q7Z7A3 348 aaKnown RBP26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 R3HDMLQ9H3Y0 253 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 GPR108Q9NPR9 543 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 HMG20BQ9P0W2 317 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 CSADQ9Y600 493 aa26.77■■□□□ 1.88
CCDC28B-201ENST00000373602 TESPA1A2RU30 521 aaPredicted RBP26.76■■□□□ 1.87
CCDC28B-201ENST00000373602 ARID4AP29374 1257 aaPredicted RBP26.76■■□□□ 1.87
CCDC28B-201ENST00000373602 DCAF15Q66K64 600 aa26.76■■□□□ 1.87
CCDC28B-201ENST00000373602 DZIP1Q86YF9 867 aaKnown RBP26.76■■□□□ 1.87
CCDC28B-201ENST00000373602 FAM163AQ96GL9 167 aaPredicted RBP26.76■■□□□ 1.87
CCDC28B-201ENST00000373602 SURF6O75683 361 aaKnown RBP26.75■■□□□ 1.87
CCDC28B-201ENST00000373602 SLF2Q8IX21 1173 aa26.75■■□□□ 1.87
CCDC28B-201ENST00000373602 PANK1Q8TE04 598 aa26.75■■□□□ 1.87
CCDC28B-201ENST00000373602 FAM198AQ9UFP1 575 aa26.75■■□□□ 1.87
CCDC28B-201ENST00000373602 MYH2Q9UKX2 1941 aa26.75■■□□□ 1.87
CCDC28B-201ENST00000373602 TCP10Q12799 353 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 OS9Q13438 667 aaPredicted RBP26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 ERICH6Q7L0X2 663 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 SPATA5Q8NB90 893 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 CNKSR2Q8WXI2 1034 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 MS4A4AQ96JQ5 239 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 WRNIP1Q96S55 665 aa26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 NOP58Q9Y2X3 529 aaKnown RBP26.74■■□□□ 1.87
CCDC28B-201ENST00000373602 TNNI3KQ59H18 835 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 OTUD7BQ6GQQ9 843 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 PI16Q6UXB8 463 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 ZNF341Q9BYN7 854 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 SNCAIPQ9Y6H5 919 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 FPGT-TNNI3KV9GXZ4 949 aa26.73■■□□□ 1.87
CCDC28B-201ENST00000373602 SPDYE5A6NIY4 337 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 FKTNO75072 461 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 UQCRFS1P1P0C7P4 283 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 MS4A1P11836 297 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 MIGA2Q7L4E1 593 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 PTPN18Q99952 460 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 IDI2Q9BXS1 227 aa26.72■■□□□ 1.87
CCDC28B-201ENST00000373602 MCAMP43121 646 aa26.71■■□□□ 1.87
CCDC28B-201ENST00000373602 MECOMQ03112 1051 aa26.71■■□□□ 1.87
CCDC28B-201ENST00000373602 CEP85Q6P2H3 762 aa26.71■■□□□ 1.87
CCDC28B-201ENST00000373602 ZKSCAN4Q969J2 545 aaPredicted RBP26.71■■□□□ 1.87
CCDC28B-201ENST00000373602 MROH7-TTC4A0A0A0MT08 1334 aa26.7■■□□□ 1.87
CCDC28B-201ENST00000373602 GTF2A2P52657 109 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 ERO1BQ86YB8 467 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 ZFPM1Q8IX07 1006 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 ZNF384Q8TF68 577 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 OTUD5Q96G74 571 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 RFX7Q2KHR2 1363 aa26.7■■□□□ 1.86
CCDC28B-201ENST00000373602 GPR75-ASB3A0A0A6YYF3 556 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 ENTPD3O75355 529 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 BTDP43251 543 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 RGS3P49796 1198 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 PKN2Q16513 984 aaKnown RBP26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 TBC1D9Q6ZT07 1266 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 DBNDD2Q9BQY9 259 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 ZNF112Q9UJU3 913 aa26.69■■□□□ 1.86
CCDC28B-201ENST00000373602 CCL15-CCL14A0A0B4J2E2 113 aa26.68■■□□□ 1.86
CCDC28B-201ENST00000373602 CCL15Q16663 113 aa26.68■■□□□ 1.86
CCDC28B-201ENST00000373602 BRI3BPQ8WY22 251 aa26.68■■□□□ 1.86
CCDC28B-201ENST00000373602 NSUN4Q96CB9 384 aaKnown RBP26.68■■□□□ 1.86
CCDC28B-201ENST00000373602 WDHD1O75717 1129 aaPredicted RBP26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 INPP5BP32019 993 aa26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 GSTO1P78417 241 aa26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 CRHR2Q13324 411 aa26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 CCDC158Q5M9N0 1113 aa26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 TTC39AQ5SRH9 613 aa26.67■■□□□ 1.86
CCDC28B-201ENST00000373602 LDHCP07864 332 aa26.66■■□□□ 1.86
CCDC28B-201ENST00000373602 RAI14Q9P0K7 980 aa26.66■■□□□ 1.86
CCDC28B-201ENST00000373602 AK9Q5TCS8 1911 aa26.66■■□□□ 1.86
CCDC28B-201ENST00000373602 RHBDL3P58872 404 aa26.65■■□□□ 1.86
CCDC28B-201ENST00000373602 PPIL2Q13356 520 aa26.65■■□□□ 1.86
CCDC28B-201ENST00000373602 ZNF512BQ96KM6 892 aaPredicted RBP26.65■■□□□ 1.86
CCDC28B-201ENST00000373602 RCAN3Q9UKA8 241 aa26.65■■□□□ 1.86
CCDC28B-201ENST00000373602 ATRNL1Q5VV63 1379 aa26.65■■□□□ 1.86
CCDC28B-201ENST00000373602 IRF6O14896 467 aa26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 RGS19P49795 217 aa26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 PPATQ06203 517 aa26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 SH3BP5LQ7L8J4 393 aa26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 DDX4Q9NQI0 724 aaKnown RBP26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 SNRKQ9NRH2 765 aa26.64■■□□□ 1.86
CCDC28B-201ENST00000373602 LRP2BPQ9P2M1 347 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms