RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 TSKSQ9UJT2 592 aa23.32■■□□□ 1.32
CKS1B-203ENST00000368439 DBNLQ9UJU6 430 aaKnown RBP23.32■■□□□ 1.32
CKS1B-203ENST00000368439 MYO5AQ9Y4I1 1855 aaKnown RBP23.32■■□□□ 1.32
CKS1B-203ENST00000368439 UNCXA6NJT0 531 aa23.31■■□□□ 1.32
CKS1B-203ENST00000368439 FAM163AQ96GL9 167 aaPredicted RBP23.31■■□□□ 1.32
CKS1B-203ENST00000368439 CLMNQ96JQ2 1002 aa23.31■■□□□ 1.32
CKS1B-203ENST00000368439 TLR7Q9NYK1 1049 aaKnown RBP23.31■■□□□ 1.32
CKS1B-203ENST00000368439 TMOD2Q9NZR1 351 aa23.31■■□□□ 1.32
CKS1B-203ENST00000368439 RPAP1Q9BWH6 1393 aaPredicted RBP23.3■■□□□ 1.32
CKS1B-203ENST00000368439 SPTY2D1Q68D10 685 aaPredicted RBP23.3■■□□□ 1.32
CKS1B-203ENST00000368439 TBC1D9Q6ZT07 1266 aa23.3■■□□□ 1.32
CKS1B-203ENST00000368439 REM2Q8IYK8 340 aaPredicted RBP23.3■■□□□ 1.32
CKS1B-203ENST00000368439 ZNF512BQ96KM6 892 aaPredicted RBP23.3■■□□□ 1.32
CKS1B-203ENST00000368439 IREB2P48200 963 aaKnown RBP23.29■■□□□ 1.32
CKS1B-203ENST00000368439 MECOMQ03112 1051 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 NFIAQ12857 509 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 IFFO2Q5TF58 517 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 SPRYD7Q5W111 196 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 ERICH6Q7L0X2 663 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 DZIP1Q86YF9 867 aaKnown RBP23.29■■□□□ 1.32
CKS1B-203ENST00000368439 CCDC8Q9H0W5 538 aaPredicted RBP23.29■■□□□ 1.32
CKS1B-203ENST00000368439 CHMP4BQ9H444 224 aaKnown RBP23.29■■□□□ 1.32
CKS1B-203ENST00000368439 RNF186Q9NXI6 227 aa23.29■■□□□ 1.32
CKS1B-203ENST00000368439 RFX7Q2KHR2 1363 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 CCDC158Q5M9N0 1113 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 TTC39AQ5SRH9 613 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 ERC1Q8IUD2 1116 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 FAM151AQ8WW52 585 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 NSUN4Q96CB9 384 aaKnown RBP23.28■■□□□ 1.32
CKS1B-203ENST00000368439 USP40Q9NVE5 1235 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 SAGE1Q9NXZ1 904 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 FAM198AQ9UFP1 575 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 CASP8AP2Q9UKL3 1982 aa23.28■■□□□ 1.32
CKS1B-203ENST00000368439 MAST2Q6P0Q8 1798 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 TM4SF4P48230 202 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 MKRN3Q13064 507 aaKnown RBP23.27■■□□□ 1.32
CKS1B-203ENST00000368439 ANKRD13AQ8IZ07 590 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 TNS4Q8IZW8 715 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 SLC10A4Q96EP9 437 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 SNRKQ9NRH2 765 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 MROH7-TTC4A0A0A0MT08 1334 aa23.27■■□□□ 1.32
CKS1B-203ENST00000368439 AK9Q5TCS8 1911 aa23.26■■□□□ 1.31
CKS1B-203ENST00000368439 HSP90AB4PQ58FF6 505 aa23.26■■□□□ 1.31
CKS1B-203ENST00000368439 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.26■■□□□ 1.31
CKS1B-203ENST00000368439 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.26■■□□□ 1.314e-8■■■■□ 19.8
CKS1B-203ENST00000368439 RHPN1Q8TCX5 695 aa23.26■■□□□ 1.31
CKS1B-203ENST00000368439 WNK4Q96J92 1243 aa23.26■■□□□ 1.31
CKS1B-203ENST00000368439 IDI2Q9BXS1 227 aa23.26■■□□□ 1.31
CKS1B-203ENST00000368439 GPR75-ASB3A0A0A6YYF3 556 aa23.25■■□□□ 1.31
CKS1B-203ENST00000368439 HMMRO75330 724 aa23.25■■□□□ 1.31
CKS1B-203ENST00000368439 CYP2E1P05181 493 aaPredicted RBP23.25■■□□□ 1.31
CKS1B-203ENST00000368439 GJA5P36382 358 aa23.25■■□□□ 1.31
CKS1B-203ENST00000368439 SLF2Q8IX21 1173 aa23.25■■□□□ 1.31
CKS1B-203ENST00000368439 YTHDC1Q96MU7 727 aaKnown RBP23.25■■□□□ 1.31
CKS1B-203ENST00000368439 TRPA1O75762 1119 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 ZBTB48P10074 688 aaPredicted RBP23.24■■□□□ 1.31
CKS1B-203ENST00000368439 BTDP43251 543 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 RHBDL3P58872 404 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 TCP10Q12799 353 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 ZFPM1Q8IX07 1006 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 IL1RAPL2Q9NP60 686 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 DOCK2Q92608 1830 aa23.24■■□□□ 1.31
CKS1B-203ENST00000368439 WDHD1O75717 1129 aaPredicted RBP23.23■■□□□ 1.31
CKS1B-203ENST00000368439 ZAP70P43403 619 aa23.23■■□□□ 1.31
CKS1B-203ENST00000368439 MAP3K9P80192 1104 aa23.23■■□□□ 1.31
CKS1B-203ENST00000368439 AACSQ86V21 672 aa23.23■■□□□ 1.31
CKS1B-203ENST00000368439 RAI14Q9P0K7 980 aa23.23■■□□□ 1.31
CKS1B-203ENST00000368439 RGS3P49796 1198 aa23.22■■□□□ 1.31
CKS1B-203ENST00000368439 VGLL4Q14135 290 aa23.22■■□□□ 1.31
CKS1B-203ENST00000368439 KIF1BPQ96EK5 621 aa23.22■■□□□ 1.31
CKS1B-203ENST00000368439 ELP3Q9H9T3 547 aa23.22■■□□□ 1.31
CKS1B-203ENST00000368439 DDX4Q9NQI0 724 aaKnown RBP23.22■■□□□ 1.31
CKS1B-203ENST00000368439 ENTPD3O75355 529 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 GSTO1P78417 241 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 HOOK2Q96ED9 719 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 PIH1D3Q9NQM4 214 aaKnown RBP23.21■■□□□ 1.31
CKS1B-203ENST00000368439 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.21■■□□□ 1.31
CKS1B-203ENST00000368439 LRP2BPQ9P2M1 347 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 ATRNL1Q5VV63 1379 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 CDK5RAP2Q96SN8 1893 aa23.21■■□□□ 1.31
CKS1B-203ENST00000368439 RAB11FIP3O75154 756 aa23.2■■□□□ 1.3
CKS1B-203ENST00000368439 LDHCP07864 332 aa23.2■■□□□ 1.3
CKS1B-203ENST00000368439 RRP1P56182 461 aaKnown RBP23.2■■□□□ 1.3
CKS1B-203ENST00000368439 SREBF2Q12772 1141 aa23.2■■□□□ 1.3
CKS1B-203ENST00000368439 MIGA2Q7L4E1 593 aa23.2■■□□□ 1.3
CKS1B-203ENST00000368439 SH3BP5LQ7L8J4 393 aa23.2■■□□□ 1.3
CKS1B-203ENST00000368439 MANSC4A6NHS7 340 aaPredicted RBP23.19■■□□□ 1.3
CKS1B-203ENST00000368439 APBB1O00213 710 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 DCAF15Q66K64 600 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 CNKSR2Q8WXI2 1034 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 OPTNQ96CV9 577 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 ZNF112Q9UJU3 913 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 SNCAIPQ9Y6H5 919 aa23.19■■□□□ 1.3
CKS1B-203ENST00000368439 FOCADQ5VW36 1801 aa23.18■■□□□ 1.3
CKS1B-203ENST00000368439 IGSF3O75054 1194 aa23.18■■□□□ 1.3
CKS1B-203ENST00000368439 ADGRA1Q86SQ6 560 aa23.18■■□□□ 1.3
CKS1B-203ENST00000368439 CLASRPQ8N2M8 674 aaKnown RBP23.18■■□□□ 1.3
CKS1B-203ENST00000368439 ZKSCAN4Q969J2 545 aaPredicted RBP23.18■■□□□ 1.3
CKS1B-203ENST00000368439 WRNIP1Q96S55 665 aa23.18■■□□□ 1.3
CKS1B-203ENST00000368439 ZNF341Q9BYN7 854 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms