RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TXKP42681 527 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 MSANTD4Q8NCY6 345 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 METTL22Q9BUU2 404 aaPredicted RBP17.55■□□□□ 0.4
PTPRF-201ENST00000359947 VAMP4O75379 141 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 SMTNP53814 917 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 STRN3Q13033 797 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 EHBP1Q8NDI1 1231 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 PRDM10Q9NQV6 1147 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 ATP6V0A2Q9Y487 856 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 HSF2BPO75031 334 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 DOK7Q18PE1 504 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 TICAM2Q86XR7 235 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 NEMFO60524 1076 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 DPY19L2Q6NUT2 758 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 SV2BQ7L1I2 683 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 CCDC25Q86WR0 208 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 IFT74Q96LB3 600 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 HAUS7Q99871 368 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 MAPK8IP1Q9UQF2 711 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 CSPG5O95196 566 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 TRPC3Q13507 836 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 RASAL2Q9UJF2 1139 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 RNF169Q8NCN4 708 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 ALDH1B1P30837 517 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 CCDC65Q8IXS2 484 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 BICDL2A1A5D9 508 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 EYA2O00167 538 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 TRAF5O00463 557 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 RUFY3Q7L099 469 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 ANO3Q9BYT9 981 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 AZI2Q9H6S1 392 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 TXNDC16Q9P2K2 825 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 V9GY48 417 aaPredicted RBP17.54■□□□□ 0.4
PTPRF-201ENST00000359947 SUPT20HQ8NEM7 779 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 WDR66Q8TBY9 1149 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 SLC52A2Q9HAB3 445 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 TBC1D7Q9P0N9 293 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 F13A1P00488 732 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 GADL1Q6ZQY3 521 aa17.54■□□□□ 0.4
PTPRF-201ENST00000359947 hCG_1642624A0A1W2PR95 340 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 TCP10L2B9ZVM9 353 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 CSADQ9Y600 493 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 DBNDD2Q9BQY9 259 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 AGTPBP1Q9UPW5 1226 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 SLC8A3P57103 927 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 TBC1D32Q96NH3 1257 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 MYL10Q9BUA6 226 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 SYT1P21579 422 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 PSMC4P43686 418 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 TNNI3KQ59H18 835 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 CCDC42Q96M95 316 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 DDX23Q9BUQ8 820 aaKnown RBP17.53■□□□□ 0.4
PTPRF-201ENST00000359947 ODF2LQ9ULJ1 636 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 FPGT-TNNI3KV9GXZ4 949 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 PPP1R9BQ96SB3 815 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 MAST3O60307 1309 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 MYCP01106 439 aaPredicted RBP17.53■□□□□ 0.4
PTPRF-201ENST00000359947 KRT19P08727 400 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 TRERF1Q96PN7 1200 aa17.53■□□□□ 0.4
PTPRF-201ENST00000359947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.53■□□□□ 0.42e-7■■■■■ 29.5
PTPRF-201ENST00000359947 GOLGA6L9A6NEM1 432 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 M0QZ92 97 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 SCNN1DP51172 638 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 FAM182BQ5T319 152 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 GUCA1BQ9UMX6 200 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 GPIHBP1Q8IV16 184 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 BIRC2Q13490 618 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 FAM169AQ9Y6X4 670 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 METTL13Q8N6R0 699 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 TTF2Q9UNY4 1162 aaKnown RBP17.52■□□□□ 0.4
PTPRF-201ENST00000359947 CTNND2Q9UQB3 1225 aa17.52■□□□□ 0.4
PTPRF-201ENST00000359947 DAPK3O43293 454 aa17.52■□□□□ 0.39
PTPRF-201ENST00000359947 STX10O60499 249 aa17.52■□□□□ 0.39
PTPRF-201ENST00000359947 EPB41P11171 864 aaKnown RBP17.52■□□□□ 0.39
PTPRF-201ENST00000359947 SRRTQ9BXP5 876 aaKnown RBP17.52■□□□□ 0.39
PTPRF-201ENST00000359947 LPXNO60711 386 aa17.52■□□□□ 0.39
PTPRF-201ENST00000359947 SNX16P57768 344 aa17.52■□□□□ 0.39
PTPRF-201ENST00000359947 ARHGEF35A5YM69 484 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 DTNBO60941 627 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 IRX5P78411 483 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-201ENST00000359947 QTRT2Q9H974 415 aaKnown RBP17.51■□□□□ 0.39
PTPRF-201ENST00000359947 USP40Q9NVE5 1235 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 DNAI1Q9UI46 699 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 GPAA1O43292 621 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 TACC1O75410 805 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 PPP2R5DQ14738 602 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 KARSQ15046 597 aaKnown RBP17.51■□□□□ 0.39
PTPRF-201ENST00000359947 FAM47AQ5JRC9 791 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 PRPHP41219 470 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 SOS1Q07889 1333 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-201ENST00000359947 GABPAQ06546 454 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 SPAG1Q07617 926 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 KIF5AQ12840 1032 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 PPP1R21Q6ZMI0 780 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 C2CD5Q86YS7 1000 aa17.51■□□□□ 0.39
PTPRF-201ENST00000359947 A0A1B0GVL5 298 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 PDE6BP35913 854 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 PPP1R7Q15435 360 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 HELLSQ9NRZ9 838 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 GOLGA1Q92805 767 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms