RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DPP8Q6V1X1 898 aaPredicted RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TMCO5AQ8N6Q1 288 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 NUDT16Q96DE0 195 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 MBD5Q9P267 1494 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PXDNLA1KZ92 1463 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ANKRD62A6NC57 917 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TLR3O15455 904 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ATP2A2P16615 1042 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 HSPA1LP34931 641 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 POTEDQ86YR6 584 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF444Q8N0Y2 327 aaPredicted RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 FAF1Q9UNN5 650 aaPredicted RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SLIT1O75093 1534 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TOPAZ1Q8N9V7 1692 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PTPRMP28827 1452 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 EVI5O60447 810 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TMTC2Q8N394 836 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SLC12A5Q9H2X9 1139 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 GGNBP2Q9H3C7 697 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TMEM51Q9NW97 253 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 IFT57Q9NWB7 429 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 LARSQ9P2J5 1176 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ABCF2Q9UG63 623 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 MARF1Q9Y4F3 1742 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DIP2CQ9Y2E4 1556 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 A0A1B0GW55 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PSDA5PKW4 1024 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L2P0CJ85 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L3P0CJ86 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L4P0CJ87 422 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L5P0CJ88 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L6P0CJ89 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4L7P0CJ90 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 CCT4P50991 539 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 ANAPC15P60006 121 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 APLFQ8IW19 511 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 ABI1Q8IZP0 508 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 GBP5Q96PP8 586 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DUX4Q9UBX2 424 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 CDC45O75419 566 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 SNW1Q13573 536 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 KIF4BQ2VIQ3 1234 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 SLC27A3Q5K4L6 730 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 RTKN2Q8IZC4 609 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 AFAP1L2Q8N4X5 818 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 LMBR1Q8WVP7 490 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 FSD2A1L4K1 749 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 NBPF26B4DH59 902 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PHLDB2Q86SQ0 1253 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 USP48Q86UV5 1035 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 BICD2Q8TD16 824 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 GAS2L1Q99501 681 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TRPM3Q9HCF6 1732 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 FAN1Q9Y2M0 1017 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TRPC3Q13507 836 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 ARHGAP29Q52LW3 1261 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 ODR4Q5SWX8 454 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 FMNL2Q96PY5 1086 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PLCB1Q9NQ66 1216 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 RAI14Q9P0K7 980 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 SEC24BO95487 1268 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 SLC5A1P13866 664 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PLCG2P16885 1265 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TAF4BQ92750 862 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 NUCKS1Q9H1E3 243 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 LIMCH1Q9UPQ0 1083 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 RNF123Q5XPI4 1314 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 KCNJ6P48051 423 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 RGS3P49796 1198 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PRKG1Q13976 671 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TTC16Q8NEE8 873 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 DDX19AQ9NUU7 478 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PCDH11XQ9BZA7 1347 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 PCDH11YQ9BZA8 1340 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TFRCP02786 760 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 NUDT18Q6ZVK8 323 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 MICAL1Q8TDZ2 1067 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TSNARE1Q96NA8 513 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TSG101Q99816 390 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 ZSCAN16Q9H4T2 348 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 G3BP2Q9UN86 482 aaKnown RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 TECPR2O15040 1411 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 VPS37CA5D8V6 355 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 WAPLQ7Z5K2 1190 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 KRT23Q9C075 422 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 RNF41Q9H4P4 317 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-202ENST00000339701 OVOS2A0A0J9YW53 1432 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 OVOS2Q6IE36 1432 aa3.72□□□□□ -1.81
CSMD3-202ENST00000339701 NAA25Q14CX7 972 aa3.71□□□□□ -1.81
CSMD3-202ENST00000339701 CC2D2BQ6DHV5 1058 aa3.71□□□□□ -1.81
CSMD3-202ENST00000339701 SMC6Q96SB8 1091 aa3.71□□□□□ -1.81
CSMD3-202ENST00000339701 MAP1BP46821 2468 aaKnown RBP3.71□□□□□ -1.81
CSMD3-202ENST00000339701 PDE4CQ08493 712 aa3.71□□□□□ -1.82
CSMD3-202ENST00000339701 ILF2Q12905 390 aaKnown RBP3.71□□□□□ -1.82
CSMD3-202ENST00000339701 IFIT5Q13325 482 aaKnown RBP3.71□□□□□ -1.82
CSMD3-202ENST00000339701 CFAP58Q5T655 872 aa3.71□□□□□ -1.82
CSMD3-202ENST00000339701 RPAP2Q8IXW5 612 aaPredicted RBP3.71□□□□□ -1.82
CSMD3-202ENST00000339701 MFSD1Q9H3U5 465 aa3.71□□□□□ -1.82
CSMD3-202ENST00000339701 UBE4BO95155 1302 aa3.71□□□□□ -1.82
CSMD3-202ENST00000339701 LUC7L3O95232 432 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms