RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SZT2Q5T011 3432 aa6.54□□□□□ -1.36
CSDE1-202ENST00000339438 MAP2K7O14733 419 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 STX6O43752 255 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 TADA3O75528 432 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 PLCB2Q00722 1185 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 CC2D1AQ6P1N0 951 aaPredicted RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 TRIM65Q6PJ69 517 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 ZNF592Q92610 1267 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 MRFAP1L1Q96HT8 127 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 GMLQ99445 158 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 CLIP2Q9UDT6 1046 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.53□□□□□ -1.364e-11■□□□□ 9.7
CSDE1-202ENST00000339438 MUC3AQ02505 3323 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 EIF3CLB5ME19 914 aaKnown RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 IRF6O14896 467 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 ARHGAP29Q52LW3 1261 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 G2E3Q7L622 706 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 TTC6Q86TZ1 520 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 DNAJC5GQ8N7S2 189 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 RAPGEF4Q8WZA2 1011 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 EIF3CQ99613 913 aaKnown RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 TMOD3Q9NYL9 352 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 FZD9O00144 591 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 APPP05067 770 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SATB1Q01826 763 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 CEP85Q6P2H3 762 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 NLRP10Q86W26 655 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 KAT2BQ92831 832 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 L3MBTL3Q96JM7 780 aaPredicted RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 CEP89Q96ST8 783 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SUFUQ9UMX1 484 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 PTPRSQ13332 1948 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 LARGE1O95461 756 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SNRPA1P09661 255 aaKnown RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 IFIT2P09913 472 aaKnown RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SMC1AQ14683 1233 aaKnown RBP6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SUSD4Q5VX71 490 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 RUFY3Q7L099 469 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 CEP120Q8N960 986 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 PPP1R13BQ96KQ4 1090 aa6.53□□□□□ -1.36
CSDE1-202ENST00000339438 SKILP12757 684 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 TPM4P67936 248 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 C11orf91Q3C1V1 193 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 TTC31Q49AM3 519 aaPredicted RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 STYK1Q6J9G0 422 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 FLAD1Q8NFF5 587 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 EPC1Q9H2F5 836 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 NPHP1O15259 732 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 FIBPO43427 364 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 KIF1CO43896 1103 aaKnown RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 HSPA4P34932 840 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 E2F4Q16254 413 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 KCNV1Q6PIU1 500 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 SGSM3Q96HU1 749 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 UPF3BQ9BZI7 483 aaKnown RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 BAZ2AQ9UIF9 1905 aaKnown RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 KIF3CO14782 793 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 KCNJ6P48051 423 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 PDE1AP54750 535 aa6.52□□□□□ -1.37
CSDE1-202ENST00000339438 RSRC2Q7L4I2 434 aaKnown RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 DDX54Q8TDD1 881 aaKnown RBP6.52□□□□□ -1.37
CSDE1-202ENST00000339438 NEMFO60524 1076 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 IGHA2P01877 340 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 CASTP20810 708 aaKnown RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 FGFR2P21802 821 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 CHMLP26374 656 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 DHX40Q8IX18 779 aaKnown RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 FMNL2Q96PY5 1086 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 OSBPL5Q9H0X9 879 aaPredicted RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 ZNF804BA4D1E1 1349 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 MYH4Q9Y623 1939 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 PSDA5PKW4 1024 aaPredicted RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 BTBD11A6QL63 1104 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 MAP3K11Q16584 847 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC158Q5M9N0 1113 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 TEX35Q5T0J7 233 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 MCTP2Q6DN12 878 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 TMED8Q6PL24 325 aaPredicted RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 SYTL4Q96C24 671 aaPredicted RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 TRMT1Q9NXH9 659 aaKnown RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 PARP3Q9Y6F1 533 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC69A6NI79 296 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 ATP6V1AP38606 617 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 CAMK4Q16566 473 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 NOL8Q76FK4 1167 aaKnown RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 GPATCH11Q8N954 259 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 AK7Q96M32 723 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 TRIM5Q9C035 493 aa6.51□□□□□ -1.37
CSDE1-202ENST00000339438 PHAXQ9H814 394 aaKnown RBP6.51□□□□□ -1.37
CSDE1-202ENST00000339438 LAMA2P24043 3122 aaKnown RBP6.5□□□□□ -1.37
CSDE1-202ENST00000339438 WTIPA6NIX2 430 aaPredicted RBP6.5□□□□□ -1.37
CSDE1-202ENST00000339438 ARMCX5Q6P1M9 558 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 LRRC31Q6UY01 552 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 C11orf57Q6ZUT1 292 aaPredicted RBP6.5□□□□□ -1.37
CSDE1-202ENST00000339438 MSL3Q8N5Y2 521 aaKnown RBP6.5□□□□□ -1.37
CSDE1-202ENST00000339438 BORCS6Q96GS4 357 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 EPB41L2O43491 1005 aaKnown RBP6.5□□□□□ -1.37
CSDE1-202ENST00000339438 DTNBO60941 627 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 POLA2Q14181 598 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 EPHA10Q5JZY3 1008 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms