RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 PTF1AQ7RTS3 328 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 PLCD3Q8N3E9 789 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 C8orf76Q96K31 380 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 CARMIL3Q8ND23 1372 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 ZNF34Q8IZ26 560 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 SPATA5Q8NB90 893 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 NBPF3Q9H094 633 aa18.04■□□□□ 0.48
SHROOM1-201ENST00000319854 EIF5P55010 431 aaKnown RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 SF3A1Q15459 793 aaKnown RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 NYAP1Q6ZVC0 841 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 TIGD1Q96MW7 591 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 ZSCAN16Q9H4T2 348 aaPredicted RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 MB21D2Q8IYB1 491 aaPredicted RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 LPIN2Q92539 896 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 LLPHQ9BRT6 129 aaKnown RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 GOLPH3LQ9H4A5 285 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 ELP1O95163 1332 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 EP400Q96L91 3159 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 CCDC66A2RUB6 948 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 PTPN14Q15678 1187 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 RBM43Q6ZSC3 357 aaKnown RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 LRRN4CLQ8ND94 238 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 ZNF274Q96GC6 653 aaPredicted RBP18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 FBXO3Q9UK99 471 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 ABCA3Q99758 1704 aa18.03■□□□□ 0.48
SHROOM1-201ENST00000319854 SLC5A1P13866 664 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 ILDR1Q86SU0 546 aaPredicted RBP18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 CLSTN2Q9H4D0 955 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 LRP2BPQ9P2M1 347 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 A0A1B0GVL5 298 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 CDK11BP21127 795 aaKnown RBP18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 HPS5Q9UPZ3 1129 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 JAG2Q9Y219 1238 aa18.02■□□□□ 0.48
SHROOM1-201ENST00000319854 CMTR1Q8N1G2 835 aaKnown RBP18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 FSIP1Q8NA03 581 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 NAPBQ9H115 298 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 SKILP12757 684 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 IGHMBP2P38935 993 aaKnown RBP18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 CLIC4Q9Y696 253 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 ITGB4P16144 1822 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 ERVV-1B6SEH8 477 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 SMIM22K7EJ46 135 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 GYG1P46976 350 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 C11orf57Q6ZUT1 292 aaPredicted RBP18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 AGXT2Q9BYV1 514 aa18.01■□□□□ 0.47
SHROOM1-201ENST00000319854 NEDD4P46934 1319 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 SPATA31A1Q5TZJ5 1347 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 TTF1Q15361 905 aaPredicted RBP18■□□□□ 0.47
SHROOM1-201ENST00000319854 NAA16Q6N069 864 aaPredicted RBP18■□□□□ 0.47
SHROOM1-201ENST00000319854 CCDC73Q6ZRK6 1079 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 C3orf67Q6ZVT6 689 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 CHMP4CQ96CF2 233 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 DDX19AQ9NUU7 478 aaKnown RBP18■□□□□ 0.47
SHROOM1-201ENST00000319854 MARCKSP29966 332 aaPredicted RBP18■□□□□ 0.47
SHROOM1-201ENST00000319854 TDO2P48775 406 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 GNL2Q13823 731 aaKnown RBP18■□□□□ 0.47
SHROOM1-201ENST00000319854 IQCB1Q15051 598 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 FILIP1Q7Z7B0 1213 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 C8orf37Q96NL8 207 aa18■□□□□ 0.47
SHROOM1-201ENST00000319854 CAMTA2O94983 1202 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 STK38Q15208 465 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 SLC4A8Q2Y0W8 1093 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 MINDY4BA8MYZ0 360 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 METAP2P50579 478 aaKnown RBP eCLIP17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 CCZ1BP86790 482 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 CCZ1P86791 482 aaPredicted RBP17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 MAP3K12Q12852 859 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 ISM2Q6H9L7 571 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 ERO1AQ96HE7 468 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 DISP2A7MBM2 1401 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 LAMA4Q16363 1823 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 PAPPAQ13219 1627 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 CHRNDQ07001 517 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 ERCC6LQ2NKX8 1250 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 CCDC152Q4G0S7 254 aa17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 STRBPQ96SI9 672 aaKnown RBP17.99■□□□□ 0.47
SHROOM1-201ENST00000319854 KIF28PB7ZC32 967 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 TULP2O00295 520 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 KINO60870 393 aaKnown RBP17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 TMEM67Q5HYA8 995 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 LCORLQ8N3X6 602 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 IPO4Q8TEX9 1081 aaKnown RBP17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 SDR42E1Q8WUS8 393 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 ZNF396Q96N95 335 aaPredicted RBP17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 SDF4Q9BRK5 362 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 EPB41L4AQ9HCS5 686 aaPredicted RBP17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 UQCRFS1P1P0C7P4 283 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 ERFEQ4G0M1 354 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 RAI14Q9P0K7 980 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 ANGEL1Q9UNK9 670 aaKnown RBP17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 SLC4A4Q9Y6R1 1079 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 MROH5Q6ZUA9 1318 aa17.98■□□□□ 0.47
SHROOM1-201ENST00000319854 CCDC69A6NI79 296 aa17.97■□□□□ 0.47
SHROOM1-201ENST00000319854 BIN1O00499 593 aa17.97■□□□□ 0.47
SHROOM1-201ENST00000319854 IFIT3O14879 490 aaKnown RBP17.97■□□□□ 0.47
SHROOM1-201ENST00000319854 CDC27P30260 824 aa17.97■□□□□ 0.47
SHROOM1-201ENST00000319854 PCDHA7Q9UN72 937 aa17.97■□□□□ 0.47
SHROOM1-201ENST00000319854 SALL1Q9NSC2 1324 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms