RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 LGSNQ5TDP6 509 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 USP48Q86UV5 1035 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 NOX5Q96PH1 765 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 RTL9Q8NET4 1388 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 SBNO2Q9Y2G9 1366 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 UTP14CQ5TAP6 766 aaKnown RBP11.61□□□□□ -0.55
CLIP1-201ENST00000302528 CNGA4Q8IV77 575 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 PLIN2Q99541 437 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 PPP2R3AQ06190 1150 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 KMT5BQ4FZB7 885 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 C8orf74Q6P047 294 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 DTHD1Q6ZMT9 781 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 Q6ZUG5 572 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 SLC12A2P55011 1212 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 ABCC11Q96J66 1382 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 GNA11P29992 359 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 VWA3BQ502W6 1294 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 CASC4Q6P4E1 433 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 KRBA2Q6ZNG9 492 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 TCEANC2Q96MN5 208 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 BCAP29Q9UHQ4 241 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 INPP5BP32019 993 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 RBM26Q5T8P6 1007 aaKnown RBP11.6□□□□□ -0.55
CLIP1-201ENST00000302528 UBL4BQ8N7F7 174 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 SEPT8Q92599 483 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 ZNF804AQ7Z570 1209 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 PNMA8AQ86V59 439 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-201ENST00000302528 LRRC43Q8N309 656 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 PSPC1Q8WXF1 523 aaKnown RBP11.6□□□□□ -0.55
CLIP1-201ENST00000302528 JARID2Q92833 1246 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-201ENST00000302528 IFNKQ9P0W0 207 aa11.6□□□□□ -0.55
CLIP1-201ENST00000302528 TRAF5O00463 557 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 RPS6KA2Q15349 733 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 POTEDQ86YR6 584 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 PKD2L1Q9P0L9 805 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 TTC22Q5TAA0 569 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 RNF168Q8IYW5 571 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-201ENST00000302528 HAUS8Q9BT25 410 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 BMP2KLQ5H9B9 411 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 GTF3C6Q969F1 213 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 ZKSCAN3Q9BRR0 538 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 ASIC3Q9UHC3 531 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 TTLL3Q9Y4R7 772 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 CAMSAP2Q08AD1 1489 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 DNAJC5BQ9UF47 199 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 UGGT2Q9NYU1 1516 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 MAGEB6P1A0A0J9YX57 407 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 SMTNP53814 917 aa11.59□□□□□ -0.55
CLIP1-201ENST00000302528 RNASE9P60153 205 aaKnown RBP11.59□□□□□ -0.55
CLIP1-201ENST00000302528 CCDC169A6NNP5 214 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 ANKRD20A3Q5VUR7 823 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 RNF10Q8N5U6 811 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 IQUBQ8NA54 791 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 RILPQ96NA2 401 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 NOC4LQ9BVI4 516 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 TRIM31Q9BZY9 425 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 TYRO3Q06418 890 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 MCMDC2Q4G0Z9 681 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 SV2BQ7L1I2 683 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 MIER3Q7Z3K6 550 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 NAP1L4Q99733 375 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 SUDS3Q9H7L9 328 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 RBM8AQ9Y5S9 174 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 THOC2Q8NI27 1593 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 AKR1B15C9JRZ8 316 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 SLC9C2Q5TAH2 1124 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 CROCCP2Q86T23 111 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 KRT15P19012 456 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 EVCP57679 992 aa11.58□□□□□ -0.56
CLIP1-201ENST00000302528 DNM1Q05193 864 aaKnown RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 BRDTQ58F21 947 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-201ENST00000302528 PI4KAP2A4QPH2 592 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 LPXNO60711 386 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 IGSF3O75054 1194 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 F13A1P00488 732 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 RUFY3Q7L099 469 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 IFNL2Q8IZJ0 200 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 PI4KAP1Q8N8J0 262 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 SETDB2Q96T68 719 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 BAG1Q99933 345 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 CCDC94Q9BW85 323 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 GPHNQ9NQX3 736 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 DDX21Q9NR30 783 aaKnown RBP eCLIP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 DHX29Q7Z478 1369 aaKnown RBP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 SPECC1L-ADORA2AF8WAN1 911 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 KRT3P12035 628 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 STRN3Q13033 797 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 XAB2Q9HCS7 855 aaKnown RBP11.57□□□□□ -0.56
CLIP1-201ENST00000302528 PIK3R4Q99570 1358 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 GOLGA6CA6NDK9 693 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 GOLGA6DP0CG33 693 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 PLCB4Q15147 1175 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 MUM1L1Q5H9M0 696 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 GBP5Q96PP8 586 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 GOLGA6AQ9NYA3 693 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 CXorf38Q8TB03 319 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 CABS1Q96KC9 395 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 NLRP3Q96P20 1036 aa11.57□□□□□ -0.56
CLIP1-201ENST00000302528 MCM9Q9NXL9 1143 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms