RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC5A1P13866 664 aa18.5■□□□□ 0.55
CCDC88B-201ENST00000301897 FGFR2P21802 821 aa18.5■□□□□ 0.55
CCDC88B-201ENST00000301897 FAM151AQ8WW52 585 aa18.5■□□□□ 0.55
CCDC88B-201ENST00000301897 LPIN2Q92539 896 aa18.5■□□□□ 0.55
CCDC88B-201ENST00000301897 HOXD10P28358 340 aa18.49■□□□□ 0.55
CCDC88B-201ENST00000301897 ZEB1P37275 1124 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-201ENST00000301897 MRPL50Q8N5N7 158 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-201ENST00000301897 AK9Q5TCS8 1911 aa18.49■□□□□ 0.55
CCDC88B-201ENST00000301897 TRIOBPQ9H2D6 2365 aa18.48■□□□□ 0.55
CCDC88B-201ENST00000301897 ANKRD23Q86SG2 305 aa18.48■□□□□ 0.55
CCDC88B-201ENST00000301897 FAM9BQ8IZU0 186 aa18.48■□□□□ 0.55
CCDC88B-201ENST00000301897 EYA2O00167 538 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 C17orf99Q6UX52 265 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 USP44Q9H0E7 712 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 GNL3LQ9NVN8 582 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 ZNF112Q9UJU3 913 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 FBXO3Q9UK99 471 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 KCNH4Q9UQ05 1017 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 ZNF521Q96K83 1311 aa18.47■□□□□ 0.55
CCDC88B-201ENST00000301897 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-201ENST00000301897 NKX2-3Q8TAU0 364 aa18.46■□□□□ 0.55
CCDC88B-201ENST00000301897 KLHDC4Q8TBB5 520 aa18.46■□□□□ 0.55
CCDC88B-201ENST00000301897 SH3TC2Q8TF17 1288 aa18.46■□□□□ 0.55
CCDC88B-201ENST00000301897 ARHGAP39Q9C0H5 1083 aa18.46■□□□□ 0.55
CCDC88B-201ENST00000301897 E9PSI1 815 aa18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 INPP5BP32019 993 aa18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 NOL9Q5SY16 702 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 MIGA2Q7L4E1 593 aa18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 SRRDQ9UH36 339 aa18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 DAGLAQ9Y4D2 1042 aa18.45■□□□□ 0.54
CCDC88B-201ENST00000301897 PDHXO00330 501 aa18.44■□□□□ 0.54
CCDC88B-201ENST00000301897 LDHBP07195 334 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-201ENST00000301897 PSMC4P43686 418 aa18.44■□□□□ 0.54
CCDC88B-201ENST00000301897 HDAC5Q9UQL6 1122 aa18.44■□□□□ 0.54
CCDC88B-201ENST00000301897 ZNF316A6NFI3 1004 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 CXCL11O14625 94 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 SEMA3EO15041 775 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 RFX5P48382 616 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 FXR1P51114 621 aaKnown RBP eCLIP18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 CDC42EP5Q6NZY7 148 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 RAET1EQ8TD07 263 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 SSH1Q8WYL5 1049 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 PARK7Q99497 189 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 CEP126Q9P2H0 1117 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 CPA4Q9UI42 421 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 ZSWIM8A7E2V4 1837 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 SALL1Q9NSC2 1324 aa18.43■□□□□ 0.54
CCDC88B-201ENST00000301897 ZBTB22O15209 634 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 CIAO1O76071 339 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 FMNL1O95466 1100 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 MYCP01106 439 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 GRK4P32298 578 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 TCP10Q12799 353 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 ATP2B3Q16720 1220 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 ZGPATQ8N5A5 531 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 TRIM47Q96LD4 638 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 DENND2AQ9ULE3 1009 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 ADGRA2Q96PE1 1338 aa18.42■□□□□ 0.54
CCDC88B-201ENST00000301897 DIXDC1Q155Q3 683 aa18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 ALDH1L2Q3SY69 923 aa18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 FASTKD5Q7L8L6 764 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 ATG9AQ7Z3C6 839 aa18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 USP40Q9NVE5 1235 aa18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 COLQQ9Y215 455 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-201ENST00000301897 OSBPP22059 807 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 PRDX5P30044 214 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 FCGRTP55899 365 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 UBXN2AP68543 259 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 NFIAQ12857 509 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 SLF2Q8IX21 1173 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 PICK1Q9NRD5 415 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 FAM198AQ9UFP1 575 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 MYPNQ86TC9 1320 aa18.4■□□□□ 0.54
CCDC88B-201ENST00000301897 H0YGN5 161 aa18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 ENTPD3O75355 529 aa18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 GJB1P08034 283 aa18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 UBTFL1P0CB47 393 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 CAPN2P17655 700 aa18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 HTATIP2Q9BUP3 242 aa18.39■□□□□ 0.53
CCDC88B-201ENST00000301897 DOCK2Q92608 1830 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 BCRP11274 1271 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 IL15P40933 162 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 GJA8P48165 433 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 MOGSQ13724 837 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 MTFR1Q15390 333 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 SLAIN1Q8ND83 568 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 IDI2Q9BXS1 227 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 BIN2Q9UBW5 565 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 SLC45A1Q9Y2W3 748 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 MYH2Q9UKX2 1941 aa18.38■□□□□ 0.53
CCDC88B-201ENST00000301897 RANBP2P49792 3224 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 CCL5P13501 91 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 CTGFP29279 349 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 SCYL3Q8IZE3 742 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 SHISA4Q96DD7 197 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 SIL1Q9H173 461 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 SMC4Q9NTJ3 1288 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 PDS5AQ29RF7 1337 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 MGAMO43451 1857 aa18.37■□□□□ 0.53
CCDC88B-201ENST00000301897 A0A0G2JLL6 359 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms