RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 GRAPQ13588 217 aa8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 TSHZ3Q63HK5 1081 aa8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 DDX46Q7L014 1031 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 ATG9AQ7Z3C6 839 aa8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 GRAPLQ8TC17 118 aaPredicted RBP8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 SSH3Q8TE77 659 aa8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 IL1RAPL2Q9NP60 686 aa8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 TLR7Q9NYK1 1049 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-201ENST00000299185 KDM2BQ8NHM5 1336 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 SNED1Q8TER0 1413 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 H0YIN7 160 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 DXOO77932 396 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 SASH1O94885 1247 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 NPR1P16066 1061 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 YBX3P16989 372 aaKnown RBP eCLIP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 LORP23490 312 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 ADORA1P30542 326 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 HOXA10P31260 410 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 PDE6BP35913 854 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 PRELPP51888 382 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 GPSM2P81274 684 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 TFCP2Q12800 502 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 CCDC57Q2TAC2 916 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 RBM26Q5T8P6 1007 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 ANKRD18AQ8IVF6 992 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 MASTLQ96GX5 879 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 RBM17Q96I25 401 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 PHOX2BQ99453 314 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 USB1Q9BQ65 265 aaKnown RBP8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 CNNM1Q9NRU3 951 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 BCS1LQ9Y276 419 aa8.05□□□□□ -1.12
DEPDC4-201ENST00000299185 H3BM21 787 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 EYA2O00167 538 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 C21orf2O43822 256 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 ALDH1A1P00352 501 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 IGHMBP2P38935 993 aaKnown RBP8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 CHRNDQ07001 517 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 METTL24Q5JXM2 366 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 STYK1Q6J9G0 422 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 CCDC136Q96JN2 1154 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 CDC5LQ99459 802 aaKnown RBP8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 SYT17Q9BSW7 474 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 COPRSQ9NQ92 184 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 PPP4R2Q9NY27 417 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 CD2APQ9Y5K6 639 aa8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 COL1A1P02452 1464 aaPredicted RBP8.04□□□□□ -1.12
DEPDC4-201ENST00000299185 ARAP2Q8WZ64 1704 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 UTRNP46939 3433 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 UFL1O94874 794 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 HSPA6P17066 643 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 RPS8P62241 208 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 SKOR1P84550 965 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 HDAC1Q13547 482 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 SMYD5Q6GMV2 418 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 LDHAL6AQ6ZMR3 332 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 RPAP2Q8IXW5 612 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 C16orf71Q8IYS4 520 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 VGLL2Q8N8G2 317 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 CRAMP1Q96RY5 1269 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 LNPKQ9C0E8 428 aa8.03□□□□□ -1.12
DEPDC4-201ENST00000299185 CAPN5O15484 640 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 HMMRO75330 724 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 G3BP1Q13283 466 aaKnown RBP eCLIP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 DALRD3Q5D0E6 543 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 AACSQ86V21 672 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 TXNRD3Q86VQ6 643 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 TTLL6Q8N841 843 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 RHPN1Q8TCX5 695 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 MPHOSPH8Q99549 860 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 DBNDD2Q9BQY9 259 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 CCDC8Q9H0W5 538 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 CHMP4BQ9H444 224 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 DCTPP1Q9H773 170 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 MINPP1Q9UNW1 487 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 IQSEC3Q9UPP2 1182 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 JAG2Q9Y219 1238 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 RIPOR2Q9Y4F9 1068 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 NDUFB9Q9Y6M9 179 aa8.02□□□□□ -1.13
DEPDC4-201ENST00000299185 NFKBIEO00221 500 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 HSP90B1P14625 803 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 TGFB2P61812 414 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 ATP2B3Q16720 1220 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 TNNI3KQ59H18 835 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 ANKRD45Q5TZF3 282 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 SMC5Q8IY18 1101 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 C7orf43Q8WVR3 580 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 CNKSR1Q969H4 720 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 EAF2Q96CJ1 260 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 RWDD1Q9H446 243 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 ZNF277Q9NRM2 450 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 PIM2Q9P1W9 311 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 POLLQ9UGP5 575 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 NOP58Q9Y2X3 529 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 ATP6V0A2Q9Y487 856 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 FPGT-TNNI3KV9GXZ4 949 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 ARFGEF1Q9Y6D6 1849 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 IRS2Q9Y4H2 1338 aa8.01□□□□□ -1.13
DEPDC4-201ENST00000299185 CIAO1O76071 339 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 IL15P40933 162 aaPredicted RBP8□□□□□ -1.13
DEPDC4-201ENST00000299185 GYG1P46976 350 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms