RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CNPY4Q8N129 248 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 LTBP1Q14766 1721 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 SRGNP10124 158 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 PDE6BP35913 854 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 ANTXR2P58335 489 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 EN1Q05925 392 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-202ENST00000297979 SPTY2D1Q68D10 685 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-202ENST00000297979 MSL1Q68DK7 614 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-202ENST00000297979 SALL1Q9NSC2 1324 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 NPR1P16066 1061 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 PRDX5P30044 214 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 SCRN1Q12765 414 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 WDR66Q8TBY9 1149 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 ZNF274Q96GC6 653 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-202ENST00000297979 PRDM10Q9NQV6 1147 aa16.81■□□□□ 0.28
C9orf3-202ENST00000297979 COL11A2P13942 1736 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-202ENST00000297979 DTNBO60941 627 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 PDCP20941 246 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 EVCP57679 992 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 SLC15A2Q16348 729 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 QSER1Q2KHR3 1735 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 KIAA1551Q9HCM1 1747 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 NEDD4P46934 1319 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 SP8Q8IXZ3 490 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 LLPHQ9BRT6 129 aaKnown RBP16.8■□□□□ 0.28
C9orf3-202ENST00000297979 STK32BQ9NY57 414 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 JAG2Q9Y219 1238 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 DUOX1Q9NRD9 1551 aa16.8■□□□□ 0.28
C9orf3-202ENST00000297979 TBC1D16Q8TBP0 767 aa16.79■□□□□ 0.28
C9orf3-202ENST00000297979 PDIA3P30101 505 aaKnown RBP16.79■□□□□ 0.28
C9orf3-202ENST00000297979 CTDSPL2Q05D32 466 aa16.79■□□□□ 0.28
C9orf3-202ENST00000297979 LARP1BQ659C4 914 aaKnown RBP16.79■□□□□ 0.28
C9orf3-202ENST00000297979 DZIP1Q86YF9 867 aaKnown RBP16.79■□□□□ 0.28
C9orf3-202ENST00000297979 SDR42E1Q8WUS8 393 aa16.79■□□□□ 0.28
C9orf3-202ENST00000297979 MTMR6Q9Y217 621 aa16.79■□□□□ 0.28
C9orf3-202ENST00000297979 ATP6V0A2Q9Y487 856 aa16.79■□□□□ 0.28
C9orf3-202ENST00000297979 F13A1P00488 732 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 DYNLL1P63167 89 aaKnown RBP16.78■□□□□ 0.28
C9orf3-202ENST00000297979 AKNAD1Q5T1N1 836 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 CHMP4CQ96CF2 233 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 CHAMP1Q96JM3 812 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 CNNM2Q9H8M5 875 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 GPHNQ9NQX3 736 aaPredicted RBP16.78■□□□□ 0.28
C9orf3-202ENST00000297979 LMBRD1Q9NUN5 540 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 POLLQ9UGP5 575 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 B4E1Z4 1266 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 CD209Q9NNX6 404 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 JAK2O60674 1132 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 ALDH1B1P30837 517 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 CYB5R4Q7L1T6 521 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 STAG1Q8WVM7 1258 aa16.78■□□□□ 0.28
C9orf3-202ENST00000297979 VPS37CA5D8V6 355 aaPredicted RBP16.77■□□□□ 0.28
C9orf3-202ENST00000297979 LDHBP07195 334 aaKnown RBP16.77■□□□□ 0.28
C9orf3-202ENST00000297979 IL1R1P14778 569 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 MFSD6Q6ZSS7 791 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 SMARCC2Q8TAQ2 1214 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 MASTLQ96GX5 879 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 KRT23Q9C075 422 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 ATP6V1DQ9Y5K8 247 aa16.77■□□□□ 0.28
C9orf3-202ENST00000297979 C6orf229H3BNL8 230 aa16.77■□□□□ 0.27
C9orf3-202ENST00000297979 CCT2P78371 535 aaKnown RBP16.77■□□□□ 0.27
C9orf3-202ENST00000297979 ANGEL1Q9UNK9 670 aaKnown RBP16.77■□□□□ 0.27
C9orf3-202ENST00000297979 KLF18A0A0U1RQI7 1052 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 PPARAQ07869 468 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 GIMAP6Q6P9H5 292 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 NSUN7Q8NE18 718 aaKnown RBP16.76■□□□□ 0.27
C9orf3-202ENST00000297979 TMEM87BQ96K49 555 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 RNF41Q9H4P4 317 aaPredicted RBP16.76■□□□□ 0.27
C9orf3-202ENST00000297979 PRPF40AO75400 957 aaKnown RBP16.76■□□□□ 0.27
C9orf3-202ENST00000297979 NKX2-3Q8TAU0 364 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 AATFQ9NY61 560 aaKnown RBP eCLIP16.76■□□□□ 0.27
C9orf3-202ENST00000297979 ANAPC4Q9UJX5 808 aa16.76■□□□□ 0.27
C9orf3-202ENST00000297979 SH2B2O14492 632 aaPredicted RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 HMGN5P82970 282 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 KLHL40Q2TBA0 621 aa16.75■□□□□ 0.27
C9orf3-202ENST00000297979 TEX2Q8IWB9 1127 aa16.75■□□□□ 0.27
C9orf3-202ENST00000297979 CRNKL1Q9BZJ0 848 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 GZF1Q9H116 711 aaPredicted RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 NCOA5Q9HCD5 579 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 TACC3Q9Y6A5 838 aa16.75■□□□□ 0.27
C9orf3-202ENST00000297979 DDX49Q9Y6V7 483 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 GOLGA8BA8MQT2 603 aa16.75■□□□□ 0.27
C9orf3-202ENST00000297979 SF3B2Q13435 895 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 FOXD4L6Q3SYB3 417 aaPredicted RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 FOXD4L3Q6VB84 417 aaPredicted RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 INCENPQ9NQS7 918 aa16.75■□□□□ 0.27
C9orf3-202ENST00000297979 BAZ2AQ9UIF9 1905 aaKnown RBP16.75■□□□□ 0.27
C9orf3-202ENST00000297979 PTPDC1A2A3K4 754 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 CTDNEP1O95476 244 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 GSTO1P78417 241 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 FAM184AQ8NB25 1140 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 MINDY4BA8MYZ0 360 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 KDM4AO75164 1064 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 BAG6P46379 1132 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 CDC37L1Q7L3B6 337 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 DDX11Q96FC9 970 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 ZSWIM5Q9P217 1185 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 HPS5Q9UPZ3 1129 aa16.74■□□□□ 0.27
C9orf3-202ENST00000297979 KIF3AQ9Y496 699 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms