RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SLC12A7Q9Y666 1083 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 CARMIL3Q8ND23 1372 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 RANBP6O60518 1105 aaKnown RBP13.43□□□□□ -0.26
CUX1-202ENST00000292538 PRDX5P30044 214 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 UBE4AQ14139 1066 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 SF3A1Q15459 793 aaKnown RBP13.43□□□□□ -0.26
CUX1-202ENST00000292538 ERCC4Q92889 916 aaPredicted RBP13.43□□□□□ -0.26
CUX1-202ENST00000292538 PGBD1Q96JS3 809 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 AGXT2Q9BYV1 514 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 TNMDQ9H2S6 317 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 TACC3Q9Y6A5 838 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 SPATA31A6Q5VVP1 1343 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 GOLGA8AA7E2F4 631 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 ZBTB43O43298 467 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 CDC27P30260 824 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 EVX2Q03828 476 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 FAM43AQ8N2R8 423 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 NUP62CLQ9H1M0 184 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 CFAP45Q9UL16 551 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 TRPC5Q9UL62 973 aaPredicted RBP13.42□□□□□ -0.26
CUX1-202ENST00000292538 AKNAD1Q5T1N1 836 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 SYNE3Q6ZMZ3 975 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 PIBF1Q8WXW3 757 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 ZSCAN16Q9H4T2 348 aaPredicted RBP13.42□□□□□ -0.26
CUX1-202ENST00000292538 MTMR7Q9Y216 660 aa13.42□□□□□ -0.26
CUX1-202ENST00000292538 A0A087WWV3 80 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 ERICH2A1L162 156 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 ESPNB1AK53 854 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 RC3H1Q5TC82 1133 aaKnown RBP13.41□□□□□ -0.26
CUX1-202ENST00000292538 SLC26A6Q9BXS9 759 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 hCG_1642624A0A1W2PR95 340 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 APOA5Q6Q788 366 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 ALG1Q9BT22 464 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 ZNF804BA4D1E1 1349 aa13.41□□□□□ -0.26
CUX1-202ENST00000292538 SH2B2O14492 632 aaPredicted RBP13.4□□□□□ -0.26
CUX1-202ENST00000292538 ATP2B1P20020 1258 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 TICAM2Q86XR7 235 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 RPGRQ92834 1020 aaKnown RBP13.4□□□□□ -0.26
CUX1-202ENST00000292538 UBAC1Q9BSL1 405 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 NRAPQ86VF7 1730 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 MECOMQ03112 1051 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 PPARAQ07869 468 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 COL4A1P02462 1669 aa13.4□□□□□ -0.26
CUX1-202ENST00000292538 MAP3K11Q16584 847 aa13.4□□□□□ -0.27
CUX1-202ENST00000292538 CPLX2Q6PUV4 134 aaKnown RBP13.4□□□□□ -0.27
CUX1-202ENST00000292538 CCAR1Q8IX12 1150 aaKnown RBP13.4□□□□□ -0.27
CUX1-202ENST00000292538 IGDCC4Q8TDY8 1250 aa13.4□□□□□ -0.27
CUX1-202ENST00000292538 PDIA4P13667 645 aaKnown RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 IARSP41252 1262 aaKnown RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 WTAPQ15007 396 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 SART3Q15020 963 aaKnown RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 DZIP1Q86YF9 867 aaKnown RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 LY9Q9HBG7 655 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 CLIC4Q9Y696 253 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 USP17L12C9JPN9 530 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 USP17L21D6R901 530 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 MARCKSP29966 332 aaPredicted RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 STK38Q15208 465 aa13.39□□□□□ -0.27
CUX1-202ENST00000292538 ZNF396Q96N95 335 aaPredicted RBP13.39□□□□□ -0.27
CUX1-202ENST00000292538 LETM1O95202 739 aaPredicted RBP13.38□□□□□ -0.27
CUX1-202ENST00000292538 GNAT2P19087 354 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 SLC10A5Q5PT55 438 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 TAF1P21675 1872 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 CCDC192P0DO97 292 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 MSNP26038 577 aaKnown RBP13.38□□□□□ -0.27
CUX1-202ENST00000292538 FAM47AQ5JRC9 791 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 ILDR1Q86SU0 546 aaPredicted RBP13.38□□□□□ -0.27
CUX1-202ENST00000292538 ZNF384Q8TF68 577 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 ZNF830Q96NB3 372 aaPredicted RBP13.38□□□□□ -0.27
CUX1-202ENST00000292538 KRT23Q9C075 422 aa13.38□□□□□ -0.27
CUX1-202ENST00000292538 A0A1B0GVL5 298 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 KIF28PB7ZC32 967 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 TM4SF1P30408 202 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 TRIM29Q14134 588 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 DIXDC1Q155Q3 683 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 FBXO18Q8NFZ0 1043 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 BCL11BQ9C0K0 894 aaPredicted RBP13.37□□□□□ -0.27
CUX1-202ENST00000292538 ANKRD2Q9GZV1 360 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 SERPINB2P05120 415 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 CYP2D6P10635 497 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 KRT27Q7Z3Y8 459 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 FSIP1Q8NA03 581 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 TMEM87BQ96K49 555 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 CNNM2Q9H8M5 875 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 KCNJ14Q9UNX9 436 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 SALL1Q9NSC2 1324 aa13.37□□□□□ -0.27
CUX1-202ENST00000292538 NMT2O60551 498 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 GUCY1A2P33402 732 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 PRR5LQ6MZQ0 368 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 CCDC73Q6ZRK6 1079 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 FBXO33Q7Z6M2 555 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 LUZP1Q86V48 1076 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 ZMYM6O95789 1325 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 RTL9Q8NET4 1388 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 C6orf229H3BNL8 230 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 UFL1O94874 794 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 SSRP1Q08945 709 aaKnown RBP13.36□□□□□ -0.27
CUX1-202ENST00000292538 SASS6Q6UVJ0 657 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 SPC24Q8NBT2 197 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms