RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ASXL2Q76L83 1435 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 MAEAQ7L5Y9 396 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 TTC6Q86TZ1 520 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 TRAPPC8Q9Y2L5 1435 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 FAM170AA1A519 330 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 C6orf163Q5TEZ5 329 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 APBB1IPQ7Z5R6 666 aaPredicted RBP12.91□□□□□ -0.34
USP53-201ENST00000274030 FNBP4Q8N3X1 1017 aaPredicted RBP12.91□□□□□ -0.34
USP53-201ENST00000274030 CCDC77Q9BR77 488 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 AATFQ9NY61 560 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP53-201ENST00000274030 PNMA6EA0A0J9YXQ4 647 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 HIBADHP31937 336 aaKnown RBP12.91□□□□□ -0.34
USP53-201ENST00000274030 PRPHP41219 470 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 CCDC6Q16204 474 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 CCDC122Q5T0U0 273 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 SV2BQ7L1I2 683 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 DENND2AQ9ULE3 1009 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 GPAA1O43292 621 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 TXKP42681 527 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 MYL5Q02045 173 aa12.91□□□□□ -0.34
USP53-201ENST00000274030 CTDSPL2Q05D32 466 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 PLBD2Q8NHP8 589 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 PHKBQ93100 1093 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 METTL22Q9BUU2 404 aaPredicted RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 CCNT1O60563 726 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 CAPN2P17655 700 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 PDE4DQ08499 809 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 BIRC3Q13489 604 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 DDX17Q92841 729 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 VPS18Q9P253 973 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 SNX14Q9Y5W7 946 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 KRT5P13647 590 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 HSPA4P34932 840 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 MRPS9P82933 396 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 PPARDQ03181 441 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 ZBTB16Q05516 673 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 NCBP1Q09161 790 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 EYA3Q99504 573 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 NOC4LQ9BVI4 516 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 SH3TC1Q8TE82 1336 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 RAD50Q92878 1312 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 CCDC114Q96M63 670 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 RBM28Q9NW13 759 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 GINS2Q9Y248 185 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 POLR2DO15514 142 aaKnown RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 FAM160A1Q05DH4 1040 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 TBC1D8BQ0IIM8 1120 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 BAG1Q99933 345 aaPredicted RBP12.9□□□□□ -0.34
USP53-201ENST00000274030 ELP1O95163 1332 aa12.9□□□□□ -0.34
USP53-201ENST00000274030 SUCLG2Q96I99 432 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 CCNL1Q9UK58 526 aaPredicted RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 ATP2A1O14983 1001 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 PUM3Q15397 648 aaKnown RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 PPP1R7Q15435 360 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 CCDC169A6NNP5 214 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 OPA1O60313 960 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 RAD51AP2Q09MP3 1159 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 LEO1Q8WVC0 666 aaPredicted RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 PPM1EQ8WY54 764 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 RBSNQ9H1K0 784 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 KCNK9Q9NPC2 374 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 USP19O94966 1318 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 ANO1Q5XXA6 986 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 CCDC65Q8IXS2 484 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 KCNH3Q9ULD8 1083 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 MAPKBP1O60336 1514 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 AKR1B15C9JRZ8 316 aaPredicted RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 DDX39AO00148 427 aaKnown RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 PRKG1Q13976 671 aa12.89□□□□□ -0.35
USP53-201ENST00000274030 RBM17Q96I25 401 aaKnown RBP12.89□□□□□ -0.35
USP53-201ENST00000274030 MRPL12P52815 198 aaKnown RBP12.88□□□□□ -0.35
USP53-201ENST00000274030 DIS3L2Q8IYB7 885 aaKnown RBP12.88□□□□□ -0.35
USP53-201ENST00000274030 IGSF22Q8N9C0 903 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 STAMQ92783 540 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 DUOX2Q9NRD8 1548 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 TCP10Q12799 353 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 CEP83Q9Y592 693 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 POLD1P28340 1107 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.88□□□□□ -0.35
USP53-201ENST00000274030 EDC3Q96F86 508 aaKnown RBP12.88□□□□□ -0.35
USP53-201ENST00000274030 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
USP53-201ENST00000274030 DEXIO95424 95 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 IL13P35225 146 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 KRT9P35527 623 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 LONRF3Q496Y0 759 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 RILPL1Q5EBL4 403 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 TBC1D7Q9P0N9 293 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 FRMD4BQ9Y2L6 1034 aa12.88□□□□□ -0.35
USP53-201ENST00000274030 IRX5P78411 483 aaPredicted RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 DDX12PQ92771 950 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 MRRFQ96E11 262 aaKnown RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 NSRP1Q9H0G5 558 aaKnown RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 ZNF408Q9H9D4 720 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 RPL13P26373 211 aaKnown RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 C17orf53Q8N3J3 647 aaPredicted RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 SREK1Q8WXA9 508 aaKnown RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 APPBP2Q92624 585 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 CNGA4Q8IV77 575 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 PODXL2Q9NZ53 605 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms