RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MAP3K12Q12852 859 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 DDB1Q16531 1140 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 TDRD7Q8NHU6 1098 aaKnown RBP19.3■□□□□ 0.68
VPS54-201ENST00000272322 PDIA4P13667 645 aaKnown RBP19.3■□□□□ 0.68
VPS54-201ENST00000272322 PFKFB1P16118 471 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 SLC51AQ86UW1 340 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 ANO10Q9NW15 660 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 IFNKQ9P0W0 207 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 FOXN1O15353 648 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 SLC5A1P13866 664 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 PNOCQ13519 176 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 TRIM29Q14134 588 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 FMR1NBQ8N0W7 255 aaPredicted RBP19.29■□□□□ 0.68
VPS54-201ENST00000272322 PDCL3Q9H2J4 239 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 SKILP12757 684 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 ATP1A3P13637 1013 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 MYRIPQ8NFW9 859 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 LPIN2Q92539 896 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 KCPQ6ZWJ8 1503 aa19.29■□□□□ 0.68
VPS54-201ENST00000272322 CYP7A1P22680 504 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 NR5A1Q13285 461 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 ADALQ6DHV7 355 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 DHX40Q8IX18 779 aaKnown RBP19.28■□□□□ 0.68
VPS54-201ENST00000272322 VGLL2Q8N8G2 317 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 KIF1AQ12756 1690 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 RANBP6O60518 1105 aaKnown RBP19.28■□□□□ 0.68
VPS54-201ENST00000272322 GRIN1Q05586 938 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 CPLX2Q6PUV4 134 aaKnown RBP19.28■□□□□ 0.68
VPS54-201ENST00000272322 MFSD6Q6ZSS7 791 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 PTF1AQ7RTS3 328 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 PLA2G4DQ86XP0 818 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 MRC1P22897 1456 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 IGHMBP2P38935 993 aaKnown RBP19.28■□□□□ 0.68
VPS54-201ENST00000272322 ITPK1Q13572 414 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 ZNF827Q17R98 1081 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 C3orf67Q6ZVT6 689 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 TMC6Q7Z403 805 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 UTP14AQ9BVJ6 771 aaKnown RBP19.28■□□□□ 0.68
VPS54-201ENST00000272322 RTEL1Q9NZ71 1219 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 RIC1Q4ADV7 1423 aa19.28■□□□□ 0.68
VPS54-201ENST00000272322 GRAMD1CQ8IYS0 662 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 MROH7-TTC4A0A0A0MT08 1334 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 DYNC1I1O14576 645 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 CBX1P83916 185 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 GLIPR1L2Q4G1C9 344 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 TMX1Q9H3N1 280 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 BCL2L12Q9HB09 334 aa19.27■□□□□ 0.68
VPS54-201ENST00000272322 SH2B2O14492 632 aaPredicted RBP19.27■□□□□ 0.67
VPS54-201ENST00000272322 SYKP43405 635 aa19.27■□□□□ 0.67
VPS54-201ENST00000272322 ADGRA1Q86SQ6 560 aa19.27■□□□□ 0.67
VPS54-201ENST00000272322 KIAA1468Q9P260 1216 aa19.27■□□□□ 0.67
VPS54-201ENST00000272322 LOC102724428A0A0B4J2F2 783 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 SIK1P57059 783 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 DYNLL1P63167 89 aaKnown RBP19.26■□□□□ 0.67
VPS54-201ENST00000272322 TTF1Q15361 905 aaPredicted RBP19.26■□□□□ 0.67
VPS54-201ENST00000272322 RBM43Q6ZSC3 357 aaKnown RBP19.26■□□□□ 0.67
VPS54-201ENST00000272322 CREBRFQ8IUR6 639 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 TFCP2L1Q9NZI6 479 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 RFX7Q2KHR2 1363 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 CHRNDQ07001 517 aa19.26■□□□□ 0.67
VPS54-201ENST00000272322 FAM177A1Q8N128 213 aaPredicted RBP19.26■□□□□ 0.67
VPS54-201ENST00000272322 XPO4Q9C0E2 1151 aaKnown RBP19.26■□□□□ 0.67
VPS54-201ENST00000272322 ZNF710Q8N1W2 664 aa19.25■□□□□ 0.67
VPS54-201ENST00000272322 GSG1L2A8MUP6 293 aa19.25■□□□□ 0.67
VPS54-201ENST00000272322 COBLO75128 1261 aa19.25■□□□□ 0.67
VPS54-201ENST00000272322 KCNG4Q8TDN1 519 aa19.25■□□□□ 0.67
VPS54-201ENST00000272322 CCDC87Q9NVE4 849 aa19.25■□□□□ 0.67
VPS54-201ENST00000272322 IGSF3O75054 1194 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 IGDCC4Q8TDY8 1250 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 ZBTB9Q96C00 473 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 LY9Q9HBG7 655 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 FAM205CA6NFA0 338 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 LRRC8AQ8IWT6 810 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 OXER1Q8TDS5 423 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 PLA2G12BQ9BX93 195 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 PATL2C9JE40 543 aaKnown RBP19.24■□□□□ 0.67
VPS54-201ENST00000272322 UBE3CQ15386 1083 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.24■□□□□ 0.67
VPS54-201ENST00000272322 STAMQ92783 540 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 SPTLC3Q9NUV7 552 aa19.24■□□□□ 0.67
VPS54-201ENST00000272322 DCCP43146 1447 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 KDM4FA0A1W2PPD8 638 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 CTAGE5O15320 804 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 KLRK1P26718 216 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 CASP1P29466 404 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 SSRP1Q08945 709 aaKnown RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 INTS5Q6P9B9 1019 aaKnown RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 UBE2Q2Q8WVN8 375 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 IL6STP40189 918 aaPredicted RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 ERICH2A1L162 156 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 UQCRFS1P1P0C7P4 283 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 WTAPQ15007 396 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 AXDND1Q5T1B0 1012 aaPredicted RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 SHC4Q6S5L8 630 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 USP49Q70CQ1 688 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 DIS3L2Q8IYB7 885 aaKnown RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 ZNF34Q8IZ26 560 aa19.23■□□□□ 0.67
VPS54-201ENST00000272322 MARCH10Q8NA82 808 aaPredicted RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 FAM217BQ9NTX9 383 aaPredicted RBP19.23■□□□□ 0.67
VPS54-201ENST00000272322 EP400Q96L91 3159 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms