RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FAM160A1Q05DH4 1040 aa21.52■■□□□ 1.04
UPF1-201ENST00000262803 SNX14Q9Y5W7 946 aa21.52■■□□□ 1.04
UPF1-201ENST00000262803 NDC80O14777 642 aa21.52■■□□□ 1.04
UPF1-201ENST00000262803 ALDH3A1P30838 453 aa21.52■■□□□ 1.04
UPF1-201ENST00000262803 DNMT1P26358 1616 aaKnown RBP21.52■■□□□ 1.04
UPF1-201ENST00000262803 WDR66Q8TBY9 1149 aa21.52■■□□□ 1.03
UPF1-201ENST00000262803 GOLGA1Q92805 767 aa21.52■■□□□ 1.03
UPF1-201ENST00000262803 MTRF1LQ9UGC7 380 aaKnown RBP21.52■■□□□ 1.03
UPF1-201ENST00000262803 FRMD4BQ9Y2L6 1034 aa21.52■■□□□ 1.03
UPF1-201ENST00000262803 SLC27A2O14975 620 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 ARHGEF10O15013 1369 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 SGSM2O43147 1006 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 PUM3Q15397 648 aaKnown RBP21.51■■□□□ 1.03
UPF1-201ENST00000262803 CDAN1Q8IWY9 1227 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 NAP1L3Q99457 506 aaPredicted RBP21.51■■□□□ 1.03
UPF1-201ENST00000262803 TIMM10P62072 90 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 RILPL1Q5EBL4 403 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 SV2BQ7L1I2 683 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 WDR44Q5JSH3 913 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 SYT10Q6XYQ8 523 aa21.51■■□□□ 1.03
UPF1-201ENST00000262803 KARSQ15046 597 aaKnown RBP21.5■■□□□ 1.03
UPF1-201ENST00000262803 CCDC129Q6ZRS4 1044 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 HAUS2Q9NVX0 235 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.5■■□□□ 1.03
UPF1-201ENST00000262803 GSTA5Q7RTV2 222 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 SH3TC1Q8TE82 1336 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 BACH1O14867 736 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 MYL5Q02045 173 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 LZTFL1Q9NQ48 299 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 EPB41P11171 864 aaKnown RBP21.5■■□□□ 1.03
UPF1-201ENST00000262803 TEX11Q8IYF3 940 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 ARFGAP2Q8N6H7 521 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.5■■□□□ 1.03
UPF1-201ENST00000262803 SBNO1A3KN83 1393 aa21.5■■□□□ 1.03
UPF1-201ENST00000262803 ZNF710Q8N1W2 664 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 LMTK3Q96Q04 1460 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 EEF2P13639 858 aaKnown RBP21.49■■□□□ 1.03
UPF1-201ENST00000262803 TNNC1P63316 161 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 CNGA4Q8IV77 575 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 OTUD6BQ8N6M0 293 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 FBF1Q8TES7 1133 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 TXNDC16Q9P2K2 825 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 TNNI3KQ59H18 835 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 FPGT-TNNI3KV9GXZ4 949 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 PDE8AO60658 829 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 MCM7P33993 719 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 MCTP2Q6DN12 878 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 DBNDD2Q9BQY9 259 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 INSRP06213 1382 aa21.49■■□□□ 1.03
UPF1-201ENST00000262803 ELP1O95163 1332 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 DEXIO95424 95 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 UBXN1Q04323 297 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 FAM173BQ6P4H8 233 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 LLPHQ9BRT6 129 aaKnown RBP21.48■■□□□ 1.03
UPF1-201ENST00000262803 GGA1Q9UJY5 639 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 PNMA2Q9UL42 364 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 BLMP54132 1417 aaPredicted RBP21.48■■□□□ 1.03
UPF1-201ENST00000262803 EYA2O00167 538 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 ARID4AP29374 1257 aaPredicted RBP21.48■■□□□ 1.03
UPF1-201ENST00000262803 CLUL1Q15846 466 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 PNMA6EA0A0J9YXQ4 647 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 A0A1B0GUL7 405 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 TUBB2AQ13885 445 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 TUBB2BQ9BVA1 445 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 HIBADHP31937 336 aaKnown RBP21.48■■□□□ 1.03
UPF1-201ENST00000262803 SMC6Q96SB8 1091 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 EDC4Q6P2E9 1401 aaKnown RBP21.48■■□□□ 1.03
UPF1-201ENST00000262803 IVLP07476 585 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 HSPA4P34932 840 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 KLHDC4Q8TBB5 520 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 IFT74Q96LB3 600 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 GUCA1BQ9UMX6 200 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 ATP6V0A2Q9Y487 856 aa21.48■■□□□ 1.03
UPF1-201ENST00000262803 EIF6P56537 245 aaKnown RBP21.47■■□□□ 1.03
UPF1-201ENST00000262803 FAM227BQ96M60 508 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 KCNA6P17658 529 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 ANKS4BQ8N8V4 417 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 TIGD1Q96MW7 591 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 GNPATO15228 680 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 MBD4O95243 580 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 ZNF790Q6PG37 636 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 DDX23Q9BUQ8 820 aaKnown RBP21.47■■□□□ 1.03
UPF1-201ENST00000262803 METTL22Q9BUU2 404 aaPredicted RBP21.47■■□□□ 1.03
UPF1-201ENST00000262803 RBM26Q5T8P6 1007 aaKnown RBP21.47■■□□□ 1.03
UPF1-201ENST00000262803 CNNM4Q6P4Q7 775 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 ZKSCAN3Q9BRR0 538 aa21.47■■□□□ 1.03
UPF1-201ENST00000262803 CALUO43852 315 aaPredicted RBP21.46■■□□□ 1.03
UPF1-201ENST00000262803 ZNF569Q5MCW4 686 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 ADAMTS12P58397 1594 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 STX10O60499 249 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 ARID5AQ03989 594 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 SEL1L2Q5TEA6 688 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 TBC1D22AQ8WUA7 517 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 ZFP91Q96JP5 570 aaPredicted RBP21.46■■□□□ 1.03
UPF1-201ENST00000262803 NOX5Q96PH1 765 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 USP19O94966 1318 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 RGS22Q8NE09 1264 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 FNBP1Q96RU3 617 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 ZNF445P59923 1031 aa21.46■■□□□ 1.03
UPF1-201ENST00000262803 ATP5DP30049 168 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms