RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MTF1Q14872 753 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 ZMYM1Q5SVZ6 1142 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 WWC2Q6AWC2 1192 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 SMYD4Q8IYR2 804 aaPredicted RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 GDAP1L1Q96MZ0 367 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 MAPK8IP1Q9UQF2 711 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 NFE2L3Q9Y4A8 694 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 MROH7-TTC4A0A0A0MT08 1334 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 IL15P40933 162 aaPredicted RBP13.75□□□□□ -0.21
USHBP1-201ENST00000252597 TOM1L2Q6ZVM7 507 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 CADPS2Q86UW7 1296 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 RASSF8Q8NHQ8 419 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 BAG1Q99933 345 aaPredicted RBP13.75□□□□□ -0.21
USHBP1-201ENST00000252597 HELLSQ9NRZ9 838 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 MINDY4BA8MYZ0 360 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 BTBD18B2RXH4 712 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 ANKRD65E5RJM6 399 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 SAFBQ15424 915 aaKnown RBP eCLIP13.75□□□□□ -0.21
USHBP1-201ENST00000252597 WDR24Q96S15 920 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 HNRNPH2P55795 449 aaKnown RBP13.75□□□□□ -0.21
USHBP1-201ENST00000252597 ST5P78524 1137 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 EXOSC10Q01780 885 aaKnown RBP13.75□□□□□ -0.21
USHBP1-201ENST00000252597 KIF4BQ2VIQ3 1234 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 JMYQ8N9B5 988 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 AIDAQ96BJ3 306 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 DHX58Q96C10 678 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 KCNH3Q9ULD8 1083 aa13.75□□□□□ -0.21
USHBP1-201ENST00000252597 ZBTB43O43298 467 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 PHKG2P15735 406 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 OAS2P29728 719 aaKnown RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 KIF23Q02241 960 aaPredicted RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 DSCC1Q9BVC3 393 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 FAM193AP78312 1265 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 PIP4K2BP78356 416 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 PPARDQ03181 441 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 GRIN1Q05586 938 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 TOGARAM2Q6ZUX3 1019 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 MIGA1Q8NAN2 632 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 CCDC102AQ96A19 550 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 ZNF274Q96GC6 653 aaPredicted RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 CBFA2T2O43439 604 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 CCT6AP40227 531 aaKnown RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 PPP2R3AQ06190 1150 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 IFIT5Q13325 482 aaKnown RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 TSGA10IPQ3SY00 556 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 ATG9AQ7Z3C6 839 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 SAMSN1Q9NSI8 373 aaKnown RBP13.74□□□□□ -0.21
USHBP1-201ENST00000252597 PPP2R2CQ9Y2T4 447 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 SLC12A7Q9Y666 1083 aa13.74□□□□□ -0.21
USHBP1-201ENST00000252597 ZSCAN12O43309 604 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 PDE4BQ07343 736 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 C10orf67Q8IYJ2 551 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 TRIM34Q9BYJ4 488 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 RABEP2Q9H5N1 569 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 TDO2P48775 406 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 FKBP15Q5T1M5 1219 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 SERTAD1Q9UHV2 236 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 MST1RQ04912 1400 aa13.73□□□□□ -0.21
USHBP1-201ENST00000252597 CYP27B1O15528 508 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NR5A1Q13285 461 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 SHC4Q6S5L8 630 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 PPFIBP1Q86W92 1011 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 PLBD2Q8NHP8 589 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NKX2-3Q8TAU0 364 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 RGPD2P0DJD1 1756 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 CDC27P30260 824 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 AKAP17AQ02040 695 aaKnown RBP13.72□□□□□ -0.21
USHBP1-201ENST00000252597 LRRFIP1Q32MZ4 808 aaKnown RBP13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NAPBQ9H115 298 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 ARFGAP3Q9NP61 516 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 ABCF2Q9UG63 623 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 PXDNLA1KZ92 1463 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 A0A0U1RQJ8 604 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NBPF26B4DH59 902 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NBPF14Q5TI25 921 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NBPF10Q6P3W6 841 aaKnown RBP13.72□□□□□ -0.21
USHBP1-201ENST00000252597 USP49Q70CQ1 688 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 CYB5R4Q7L1T6 521 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 NBPF15Q8N660 670 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 ATRIPQ8WXE1 791 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 PLEKHA4Q9H4M7 779 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 VPS18Q9P253 973 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 IMPACTQ9P2X3 320 aa13.72□□□□□ -0.21
USHBP1-201ENST00000252597 SOWAHDA6NJG2 315 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 YEATS4O95619 227 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 PRR29P0C7W0 189 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 ZNF569Q5MCW4 686 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 SMARCE1Q969G3 411 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 CABP5Q9NP86 173 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 CMA1P23946 247 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 SMC1AQ14683 1233 aaKnown RBP13.71□□□□□ -0.21
USHBP1-201ENST00000252597 OSBPL5Q9H0X9 879 aaPredicted RBP13.71□□□□□ -0.21
USHBP1-201ENST00000252597 CALCOCO1Q9P1Z2 691 aa13.71□□□□□ -0.21
USHBP1-201ENST00000252597 ANGEL1Q9UNK9 670 aaKnown RBP13.71□□□□□ -0.21
USHBP1-201ENST00000252597 ANTXR2P58335 489 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 GPS2Q13227 327 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 NCAPHQ15003 741 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 BRAPQ7Z569 592 aa13.7□□□□□ -0.22
USHBP1-201ENST00000252597 DIS3L2Q8IYB7 885 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms