RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 OR8I2Q8N0Y5 310 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 SLC25A22Q9H936 323 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 CELA1Q9UNI1 258 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 TMED3Q9Y3Q3 217 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 C9orf170A2RU37 121 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 SMCO3A2RU48 225 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 ZNF705EA8MWA4 302 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-222ENST00000642141 FABP1P07148 127 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 PRB4P10163 310 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-222ENST00000642141 MIFP14174 115 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 ANXA7P20073 488 aaKnown RBP7.43□□□□□ -1.22
SCN1A-222ENST00000642141 NUTF2P61970 127 aaKnown RBP7.43□□□□□ -1.22
SCN1A-222ENST00000642141 AKR1C1Q04828 323 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 TMEM41BQ5BJD5 291 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 IGFL4Q6B9Z1 124 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 LGALS9CQ6DKI2 356 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 OR8G2PQ6IF36 304 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 OR4B1Q8NGF8 309 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 COQ8AQ8NI60 647 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 TRGV9Q99603 122 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 RSG1Q9BU20 258 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 DOK5Q9P104 306 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 PFDN2Q9UHV9 154 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 FRAS1Q86XX4 4008 aa7.43□□□□□ -1.22
SCN1A-222ENST00000642141 PIGBOS1A0A0B4J2F0 54 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SSSCA1O60232 199 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 NDUFB6O95139 128 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SLC25A6P12236 298 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 ID1P41134 155 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 NKX2-1P43699 371 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 UBE2MP61081 183 aaKnown RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 RPP30P78346 268 aaKnown RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 C4orf46Q504U0 113 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 THAP8Q8NA92 274 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 OR1B1Q8NGR6 318 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 C20orf173Q96LM9 149 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 CIB3Q96Q77 187 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SDHCQ99643 169 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SCRT1Q9BWW7 348 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SLC35B3Q9H1N7 401 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 SLC25A32Q9H2D1 315 aa7.42□□□□□ -1.22
SCN1A-222ENST00000642141 STRAPQ9Y3F4 350 aaKnown RBP7.42□□□□□ -1.22
SCN1A-222ENST00000642141 PRSS46E5RG02 174 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 SOCS3O14543 225 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 CCNKO75909 580 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 SCGB1D2O95969 90 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 OR4E1P0C645 316 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 ZNF705DP0CH99 300 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-222ENST00000642141 ZNF705BP0CI00 300 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-222ENST00000642141 HLA-DRB4P13762 266 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 NUP62P37198 522 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-222ENST00000642141 PSMB3P49720 205 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 RRAS2P62070 204 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-222ENST00000642141 FGL1Q08830 312 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 C12orf74Q32Q52 190 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 C1orf194Q5T5A4 169 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 ACOT7LQ6ZUV0 252 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 C16orf92Q96LL3 132 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 C1QTNF4Q9BXJ3 329 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 HRH4Q9H3N8 390 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 SAV1Q9H4B6 383 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-222ENST00000642141 PSENENQ9NZ42 101 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 PLA2G2EQ9NZK7 142 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 GSKIPQ9P0R6 139 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 APLNQ9ULZ1 77 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 HLA-DRB4X5D2U9 266 aa7.41□□□□□ -1.22
SCN1A-222ENST00000642141 TRAV10A0A0B4J240 114 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 ZNF98A6NK75 572 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 C11orf94C9JXX5 98 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 IFNA21P01568 189 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 BTCP35070 178 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 ID3Q02535 119 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 FAM78BQ5VT40 261 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 EBLN2Q6P2I7 272 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 FOXI2Q6ZQN5 318 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 RNF182Q8N6D2 247 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 BPIFCQ8NFQ6 507 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 C17orf77Q96MU5 243 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 TMEM147Q9BVK8 224 aa7.4□□□□□ -1.22
SCN1A-222ENST00000642141 SEPSECSQ9HD40 501 aaKnown RBP7.4□□□□□ -1.22
SCN1A-222ENST00000642141 VPS13DQ5THJ4 4388 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 IGHV4-4A0A075B6R2 117 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 DEFB131BA0A096LNP1 70 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 NAP1L6A6NFF2 107 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 CENPXA8MT69 81 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 ISLRO14498 428 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 PRM2P04554 102 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 IL5P05113 134 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 SNRPCP09234 159 aaKnown RBP7.39□□□□□ -1.23
SCN1A-222ENST00000642141 OR5G3P0C626 314 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 METTL15P1P0C7V9 234 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 IL7P13232 177 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 GALR1P47211 349 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 PAX9P55771 341 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 PSG9Q00887 426 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 IAH1Q2TAA2 248 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-222ENST00000642141 CYP2G1PQ6ZSU1 146 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF709Q8N972 641 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 OR4D5Q8NGN0 318 aa7.39□□□□□ -1.23
SCN1A-222ENST00000642141 DEDD2Q8WXF8 326 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms