RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IGKV3D-15A0A087WSY6 115 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 A0A087WX48 190 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 COLCA1Q6ZS62 124 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF501Q96CX3 271 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-220ENST00000641603 YPEL4Q96NS1 127 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 SAA1P0DJI8 122 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-220ENST00000641603 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-220ENST00000641603 HRKO00198 91 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 ZNHIT1O43257 154 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 Q6ZT83 130 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 CARD19Q96LW7 228 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 RFNGQ9Y644 331 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 RBMY1FQ15415 496 aaKnown RBP3.84□□□□□ -1.8
SCN1A-220ENST00000641603 LINC00696Q6ZRV3 163 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 C9orf139Q6ZV77 190 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 LINC00643Q86TS7 51 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 GTSCR1Q86UQ5 136 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 C5orf67F2Z3F1 127 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 TMEM158Q8WZ71 300 aa3.84□□□□□ -1.8
SCN1A-220ENST00000641603 C1orf147Q96MC9 270 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFB8O95169 186 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 ZCCHC24Q8N2G6 241 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CEACAM4O75871 244 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFV3P56181 108 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 SYNJ2BPP57105 145 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 FAM110AQ9BQ89 295 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 PLXNA1Q9UIW2 1896 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 SHISA8B8ZZ34 492 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CELA3AP09093 270 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 Q6ZUT4 128 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CXorf67Q86X51 503 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 KLF14Q8TD94 323 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 PHLDA1Q8WV24 401 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 LINC00477Q96M19 166 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 MBNL3Q9NUK0 354 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 NUP214P35658 2090 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 LY6G5BQ8NDX9 201 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 TRBV6-1A0A0K0K1D8 114 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CSRP2Q16527 193 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 LYZL1Q6UWQ5 148 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 DDB2Q92466 427 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 COL5A3P25940 1745 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 NYNRINQ9P2P1 1898 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 NRXN2Q9P2S2 1712 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 hADV29S1A0JD25 119 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 HS3ST6Q96QI5 342 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 INTS1Q8N201 2190 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 PAX9P55771 341 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 LENEPQ9Y5L5 61 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 SDK1Q7Z5N4 2213 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CTRLP40313 264 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 MRPS36P82909 103 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 Q6ZS52 159 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 DOCK3Q8IZD9 2030 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 NACAE9PAV3 2078 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CCL3P10147 92 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 CCL2P13500 99 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF493Q6ZR52 646 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 TPRP12270 2363 aaKnown RBP3.83□□□□□ -1.8
SCN1A-220ENST00000641603 IGLV3-12A0A075B6K2 115 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF726P1Q15940 193 aa3.83□□□□□ -1.8
SCN1A-220ENST00000641603 LTAP01374 205 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 HAPLN4Q86UW8 402 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 SHANK2-AS3Q9BTD1 123 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TIMM21Q9BVV7 248 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TM2D2Q9BX73 214 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 CFC1BP0CG36 223 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 CFC1P0CG37 223 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 GLRXP35754 106 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 MNX1P50219 401 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-220ENST00000641603 SAA2P0DJI9 122 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-220ENST00000641603 PDE6GP18545 87 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 FHL1Q13642 323 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 NABP1Q96AH0 204 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 LINC00479Q96M42 142 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 PRADC1Q9BSG0 188 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 PEMTQ9UBM1 199 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 PATE4P0C8F1 98 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF138P52744 262 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 KLK15Q9H2R5 256 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1D-8A0A087WSZ0 117 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 A0A0B4J2C4 111 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 FAM240AA0A1B0GVK7 77 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TMEM213A2RRL7 107 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 MYOD1P15172 320 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 SPEM2Q0P670 501 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 Q6ZSR3 168 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 C20orf173Q96LM9 149 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 FZR1Q9UM11 496 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TRBV25-1A0A075B6N4 114 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 CD28P10747 220 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 HERV-K104P63124 156 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TMEM14BQ9NUH8 114 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFC1O43677 76 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 RNF186Q9NXI6 227 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 MCM3APO60318 1980 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 RHOHQ15669 191 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 DEFB119Q8N690 84 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 DEPPQ9NTK1 212 aa3.82□□□□□ -1.8
SCN1A-220ENST00000641603 TRAV13-2A0A0B4J235 113 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms