RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ACANP16112 2415 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 HIVEP2P31629 2446 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 OR2T8A6NH00 312 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 SH2D7A6NKC9 451 aaPredicted RBP8.22□□□□□ -1.09
CLN3-248ENST00000636355 FAM74A7A6NL05 159 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 PAGE4O60829 102 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 IL4P05112 153 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 ELANEP08246 267 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 GP9P14770 177 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 ORM2P19652 201 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 PSMB8P28062 276 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 GPR183P32249 361 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 ADMP35318 185 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 TPPP2P59282 170 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 CD81P60033 236 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 FOXE3Q13461 319 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 PDE6HQ13956 83 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 RHEBQ15382 184 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 FAM90A2PQ658T7 463 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 MYOZ3Q8TDC0 251 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 GPR82Q96P67 336 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 NIPSNAP3BQ9BS92 247 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 PAXXQ9BUH6 204 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 SLC25A39Q9BZJ4 359 aaPredicted RBP8.22□□□□□ -1.09
CLN3-248ENST00000636355 OR51M1Q9H341 326 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 YAE1D1Q9NRH1 226 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 DOK5Q9P104 306 aa8.22□□□□□ -1.09
CLN3-248ENST00000636355 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.21□□□□□ -1.1
CLN3-248ENST00000636355 DNAJC9-AS1A6NH13 148 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 B4DEV8 164 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 DEFA5Q01523 94 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 ZNF343Q6P1L6 599 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 BPIFA4PQ86YQ2 179 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 OR4F5Q8NH21 305 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 ZNF503Q96F45 646 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 OR4F4Q96R69 305 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 TMPRSS5Q9H3S3 457 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 PRELID1Q9Y255 219 aa8.21□□□□□ -1.1
CLN3-248ENST00000636355 RNASE1P07998 156 aaKnown RBP8.2□□□□□ -1.1
CLN3-248ENST00000636355 PF4V1P10720 104 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 RPL7P18124 248 aaKnown RBP8.2□□□□□ -1.1
CLN3-248ENST00000636355 SRD5A1P18405 259 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 MEOX2P50222 304 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 C1orf194Q5T5A4 169 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 MORN5Q5VZ52 161 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 CST9LP1Q5W188 147 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 TEX38Q6PEX7 206 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 OR4F17Q8NGA8 305 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 ZNF418Q8TF45 676 aaPredicted RBP8.2□□□□□ -1.1
CLN3-248ENST00000636355 FXYD5Q96DB9 178 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 NOL4LQ96MY1 436 aaPredicted RBP8.2□□□□□ -1.1
CLN3-248ENST00000636355 JMJD8Q96S16 334 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 GSX1Q9H4S2 264 aaPredicted RBP8.2□□□□□ -1.1
CLN3-248ENST00000636355 ZFAND3Q9H8U3 227 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 RABAC1Q9UI14 185 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 PUS1Q9Y606 427 aaKnown RBP eCLIP8.2□□□□□ -1.1
CLN3-248ENST00000636355 OTOGQ6ZRI0 2925 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 CSMD1Q96PZ7 3565 aa8.2□□□□□ -1.1
CLN3-248ENST00000636355 MTORP42345 2549 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 NDUFA4O00483 81 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 ZNF253O75346 499 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 CLEC3BP05452 202 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 HIST1H1EP10412 219 aaKnown RBP8.19□□□□□ -1.1
CLN3-248ENST00000636355 ARL3P36405 182 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 USF2Q15853 346 aaPredicted RBP8.19□□□□□ -1.1
CLN3-248ENST00000636355 GUCA2BQ16661 112 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 CLEC19AQ6UXS0 136 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 LYPD1Q8N2G4 141 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 ARL6IP6Q8N6S5 226 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 CLRN3Q8NCR9 226 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 WFDC12Q8WWY7 111 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 SMIM7Q9BQ49 75 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 CHRDL1Q9BU40 450 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 NAT8Q9UHE5 227 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 YTHDF2Q9Y5A9 579 aaKnown RBP8.19□□□□□ -1.1
CLN3-248ENST00000636355 LY96Q9Y6Y9 160 aa8.19□□□□□ -1.1
CLN3-248ENST00000636355 NSD1Q96L73 2696 aaPredicted RBP8.18□□□□□ -1.1
CLN3-248ENST00000636355 A0A087WWC5 75 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 ZNF98A6NK75 572 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 GGTLC3B5MD39 225 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 C9JCJ5 164 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 H3BQ15 152 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 OR10J4P0C629 311 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 MYCNOSP40205 109 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 ATP5G3P48201 142 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 HILS1P60008 231 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 UBE2G2P60604 165 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 Q6ZS46 218 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 IL17RELQ6ZVW7 336 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 C5orf17Q8NAS9 161 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 HIST1H2BAQ96A08 127 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 TVP23CQ96ET8 276 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 MS4A10Q96PG2 267 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 METTL26Q96S19 204 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 PARLQ9H300 379 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 LINC00527Q9UJ94 153 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 S4R3C0 116 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 AKAP9Q99996 3911 aa8.18□□□□□ -1.1
CLN3-248ENST00000636355 A0A087X0K7 114 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 ZNF727A8MUV8 499 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms