RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PDZD11Q5EBL8 140 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 SGMS2Q8NHU3 365 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 LY96Q9Y6Y9 160 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 CXorf1O96002 111 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 CRYGCP07315 174 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 GZMBP10144 247 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 AREGP15514 252 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 NPY1RP25929 384 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 RIPPLY3P57055 190 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 BLCAPP62952 87 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 ASPHD1Q5U4P2 390 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 TMEM68Q96MH6 324 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 ARL2-SNX15V9GYD0 113 aa11.13□□□□□ -0.63
CLN3-242ENST00000635958 FNDC10F2Z333 226 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 IGF1P05019 195 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 CNN1P51911 297 aaKnown RBP11.12□□□□□ -0.63
CLN3-242ENST00000635958 SUB1P53999 127 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-242ENST00000635958 TAS2R60P59551 318 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 TTC9CQ8N5M4 171 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 FAM103A1Q9BTL3 118 aaKnown RBP11.12□□□□□ -0.63
CLN3-242ENST00000635958 ZNF580Q9UK33 172 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 A0A1W2PPQ1 181 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 SH2D7A6NKC9 451 aaPredicted RBP11.12□□□□□ -0.63
CLN3-242ENST00000635958 LINC01548A6NM66 108 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 NPIPB5A8MRT5 1133 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 INAFM1C9JVW0 142 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 PRSS46E5RG02 174 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 NDUFAF3Q9BU61 184 aa11.12□□□□□ -0.63
CLN3-242ENST00000635958 FN1P02751 2386 aaKnown RBP11.11□□□□□ -0.63
CLN3-242ENST00000635958 A8MWP6 167 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 ATP6V0E1O15342 81 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 RAB31Q13636 194 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 KLK9Q2XQG4 91 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 COX19Q49B96 90 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 C19orf54Q5BKX5 351 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 Q71RC1 249 aaPredicted RBP11.11□□□□□ -0.63
CLN3-242ENST00000635958 TMEM144Q7Z5S9 345 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 MRPL52Q86TS9 123 aaKnown RBP11.11□□□□□ -0.63
CLN3-242ENST00000635958 LINC01551Q86U37 167 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 TNFRSF19Q9NS68 423 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 KLK9Q9UKQ9 250 aa11.11□□□□□ -0.63
CLN3-242ENST00000635958 F11RQ9Y624 299 aaKnown RBP11.11□□□□□ -0.63
CLN3-242ENST00000635958 DNAJC9-AS1A6NH13 148 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 YPEL3P61236 119 aaPredicted RBP11.1□□□□□ -0.63
CLN3-242ENST00000635958 Q6ZS46 218 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 NECAP1Q8NC96 275 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 OR1L6Q8NGR2 347 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 ZNF418Q8TF45 676 aaPredicted RBP11.1□□□□□ -0.63
CLN3-242ENST00000635958 NPVFQ9HCQ7 196 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 ESM1Q9NQ30 184 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 PXMP4Q9Y6I8 212 aa11.1□□□□□ -0.63
CLN3-242ENST00000635958 CRLF1O75462 422 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 REG1AP05451 166 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 STAG3L2P0CL84 134 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 STAG3L3P0CL85 134 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 APELAP0DMC3 54 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 MFAP2P55001 183 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 RPL15P61313 204 aaKnown RBP11.09□□□□□ -0.63
CLN3-242ENST00000635958 PAFAH1B2P68402 229 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 CDPF1Q6NVV7 123 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 GBGT1Q8N5D6 347 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 NPFFR1Q9GZQ6 430 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 WNT10AQ9GZT5 417 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 FUT9Q9Y231 359 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 TRAPPC1Q9Y5R8 145 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 RD3LP0DJH9 198 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 HILS1P60008 231 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 Q8N2B8 174 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 FAM110DQ8TAY7 271 aaPredicted RBP11.09□□□□□ -0.63
CLN3-242ENST00000635958 TMEM37Q8WXS4 190 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 UHRF2Q96PU4 802 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 PRSS22Q9GZN4 317 aa11.09□□□□□ -0.63
CLN3-242ENST00000635958 NIPBLQ6KC79 2804 aaeCLIP11.09□□□□□ -0.63
CLN3-242ENST00000635958 TRBV9A0A0B4J1U6 114 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 ZNF320A2RRD8 509 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 UNQ5815/PRO19632Q6UWF5 114 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 CACNG8Q8WXS5 425 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 SFRP2Q96HF1 295 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 DUX5Q96PT3 197 aa11.08□□□□□ -0.64
CLN3-242ENST00000635958 TRAV41A0A0B4J266 112 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 C9JCJ5 164 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 CORTO00230 105 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 BRI3O95415 125 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 RNASE1P07998 156 aaKnown RBP11.07□□□□□ -0.64
CLN3-242ENST00000635958 NPPCP23582 126 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 OR10J1P30954 320 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 RHOBP62745 196 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 FAM78BQ5VT40 261 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 CST9LP1Q5W188 147 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 OR10G8Q8NGN5 311 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 FANCD2OSQ96PS1 177 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 PRO1933Q9H354 126 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 ZNF702PQ9H963 129 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 IGLV11-55A0A075B6I3 123 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 G3V318 75 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 HMGB3O15347 200 aaKnown RBP11.07□□□□□ -0.64
CLN3-242ENST00000635958 PPIFP30405 207 aaKnown RBP11.07□□□□□ -0.64
CLN3-242ENST00000635958 SELENOTP62341 195 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 CD69Q07108 199 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 C19orf35Q6ZS72 473 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms