RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 OR10G4Q8NGN3 311 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 OR10G9Q8NGN4 311 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 OR10G7Q8NGN6 311 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 SEPSECSQ9HD40 501 aaKnown RBP11.27□□□□□ -0.61
LIMS3-206ENST00000631420 IGHV3OR16-13A0A075B7E8 117 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 IGHV3-74A0A0B4J1X5 117 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 RIPPLY3P57055 190 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 AKR1C8PQ5T2L2 129 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 C10orf113Q5VZT2 155 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 EIF5AL1Q6IS14 154 aaKnown RBP11.26□□□□□ -0.61
LIMS3-206ENST00000631420 FAM122CQ6P4D5 195 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 SHISA2Q6UWI4 295 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 REC114Q7Z4M0 266 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 C1QL4Q86Z23 238 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 ZNF680Q8NEM1 530 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 PHYHIPLQ96FC7 376 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 RABAC1Q9UI14 185 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 HIGD1AQ9Y241 93 aa11.26□□□□□ -0.61
LIMS3-206ENST00000631420 TRAV5A0A0B4J249 113 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 IGHV3-66A0A0C4DH42 116 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 LGALS9O00182 355 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 TMEM41BQ5BJD5 291 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 PXDC1Q5TGL8 231 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 FAM78BQ5VT40 261 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 LEMD1Q68G75 181 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 LINC00305Q7Z4B0 112 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 OR1L4Q8NGR5 311 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 SPATA3Q8NHX4 192 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 GATAD1Q8WUU5 269 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 SELENOKQ9Y6D0 94 aa11.25□□□□□ -0.61
LIMS3-206ENST00000631420 ELOA3CA0A087WX78 387 aaPredicted RBP11.24□□□□□ -0.61
LIMS3-206ENST00000631420 TMEM213A2RRL7 107 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 K7EMT4 169 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 MBP02144 154 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 NPPCP23582 126 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 CRYBB3P26998 211 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 SULT1A2P50226 295 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 ZNF726P1Q15940 193 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 MIR17HGQ75NE6 70 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 SSX7Q7RTT5 188 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 OR4F17Q8NGA8 305 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 OR4F4Q96R69 305 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 METTL26Q96S19 204 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 PFDN5Q99471 154 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 SCRT1Q9BWW7 348 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 SLC25A39Q9BZJ4 359 aaPredicted RBP11.24□□□□□ -0.61
LIMS3-206ENST00000631420 UFC1Q9Y3C8 167 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 U3KQE9 123 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 UMAD1C9J7I0 102 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 HMGB3O15347 200 aaKnown RBP11.24□□□□□ -0.61
LIMS3-206ENST00000631420 PF4P02776 101 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 IL34Q6ZMJ4 242 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 ADAMTSL5Q6ZMM2 481 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 OR9G4Q8NGQ1 327 aa11.24□□□□□ -0.61
LIMS3-206ENST00000631420 DAZ1Q9NQZ3 744 aaKnown RBP11.24□□□□□ -0.61
LIMS3-206ENST00000631420 ZNF98A6NK75 572 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 A8MWP6 167 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 H3BRN7 92 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 OVOL1O14753 267 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 LINC00482Q8N8I6 264 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 FAM213BQ8TBF2 198 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 PCNPQ8WW12 178 aaKnown RBP11.23□□□□□ -0.61
LIMS3-206ENST00000631420 SHANK2-AS3Q9BTD1 123 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 SLC25A22Q9H936 323 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 SMPXQ9UHP9 88 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 FUT9Q9Y231 359 aa11.23□□□□□ -0.61
LIMS3-206ENST00000631420 STAB1Q9NY15 2570 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 WNK1Q9H4A3 2382 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 IGHV7-4-1A0A0J9YVY3 117 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 A0A1W2PPV4 95 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 C2orf70A6NJV1 201 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 SEC14L6B5MCN3 397 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 BUB3O43684 328 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 CBLN1P23435 193 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 CDC34P49427 236 aaPredicted RBP11.22□□□□□ -0.61
LIMS3-206ENST00000631420 RHOBP62745 196 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 RAB24Q969Q5 203 aa11.22□□□□□ -0.61
LIMS3-206ENST00000631420 ACTR3CQ9C0K3 210 aaPredicted RBP11.22□□□□□ -0.61
LIMS3-206ENST00000631420 CHEK1O14757 476 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 IFNA7P01567 189 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 CSN3P07498 182 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 FOLR2P14207 255 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 RNF141Q8WVD5 230 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 FAM167A-AS1Q96KT0 104 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 RHPN1-AS1Q9BWJ2 59 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 SLC25A2Q9BXI2 301 aa11.21□□□□□ -0.61
LIMS3-206ENST00000631420 SNRPCP09234 159 aaKnown RBP11.2□□□□□ -0.62
LIMS3-206ENST00000631420 C8orf88P0DMB2 117 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 RAB5CP51148 216 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 LCN15Q6UWW0 184 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 RNF2Q99496 336 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 ELOVL1Q9BW60 279 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 MRPL32Q9BYC8 188 aaKnown RBP11.2□□□□□ -0.62
LIMS3-206ENST00000631420 PEMTQ9UBM1 199 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 UBQLN2Q9UHD9 624 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 ZNF705EA8MWA4 302 aaPredicted RBP11.2□□□□□ -0.62
LIMS3-206ENST00000631420 C16orf54Q6UWD8 224 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 ZNF503Q96F45 646 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 TRRAPQ9Y4A5 3859 aa11.2□□□□□ -0.62
LIMS3-206ENST00000631420 CTXND1A0A1B0GTU2 59 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms