RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CD99P14209 185 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 ACTL10Q5JWF8 245 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 PRR31Q5SQ13 230 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 DMRTA1Q5VZB9 504 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 SMIM15Q7Z3B0 74 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 OR8I2Q8N0Y5 310 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 TMEM116Q8NCL8 245 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 ABCA2Q9BZC7 2435 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 A0A1W2PRE2 83 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 GRIFINA4D1Z8 144 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 SELENOTP62341 195 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 FOXL1Q12952 345 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 PRR27Q6MZM9 219 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 HIST1H2BLQ99880 126 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 NDUFAF3Q9BU61 184 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 ISLRO14498 428 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 IGLV2-8P01709 118 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 BCL6BQ8N143 479 aaPredicted RBP8.42□□□□□ -1.06
CUX1-221ENST00000622516 FAM168AQ92567 244 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 PITPNC1Q9UKF7 332 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 V9GYV3 84 aa8.42□□□□□ -1.06
CUX1-221ENST00000622516 IGHV3OR16-10A0A075B7F0 116 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 PGPA6NDG6 321 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 SH2D7A6NKC9 451 aaPredicted RBP8.41□□□□□ -1.06
CUX1-221ENST00000622516 ODF3BA8MYP8 253 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 C9JCJ5 164 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 I3L2K1 104 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 M0QZK8 103 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 HYPMO75409 117 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 IGLC1P0CG04 106 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 PAX1P15863 534 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 RPL15P61313 204 aaKnown RBP8.41□□□□□ -1.06
CUX1-221ENST00000622516 NDPQ00604 133 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 Q5PR19 223 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 ZNF329Q86UD4 541 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 MRPL41Q8IXM3 137 aaKnown RBP8.41□□□□□ -1.06
CUX1-221ENST00000622516 PACRGQ96M98 296 aaPredicted RBP8.41□□□□□ -1.06
CUX1-221ENST00000622516 A8MWP6 167 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 M0R1W7 72 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 EREGO14944 169 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 TGOLN2O43493 480 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 CEACAM3P40198 252 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 IER3P46695 156 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 FAM120AOSQ5T036 256 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 NOL4LQ96MY1 436 aaPredicted RBP8.41□□□□□ -1.06
CUX1-221ENST00000622516 TRGV9Q99603 122 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 ASCL2Q99929 193 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 IL36BQ9NZH7 164 aa8.41□□□□□ -1.06
CUX1-221ENST00000622516 K7EIM0 57 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 NBEAP1P0C6P0 100 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 HOXB4P17483 251 aaPredicted RBP8.4□□□□□ -1.06
CUX1-221ENST00000622516 CX3CL1P78423 397 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 TMEM256Q8N2U0 113 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 PERPQ96FX8 193 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 RASL11BQ9BPW5 248 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 IGHV3OR16-8A0A075B7F1 116 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 ELOA3CA0A087WX78 387 aaPredicted RBP8.4□□□□□ -1.06
CUX1-221ENST00000622516 IGHV3-35A0A0C4DH35 117 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 SERTM2A0A1B0GWG4 89 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 IGKV1-17P01599 117 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 TYMSP04818 313 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 SLC25A5P05141 298 aaKnown RBP8.4□□□□□ -1.06
CUX1-221ENST00000622516 ADMP35318 185 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 C5orf64Q2M2E5 130 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 TM4SF20Q53R12 229 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 IBA57Q5T440 356 aaKnown RBP8.4□□□□□ -1.06
CUX1-221ENST00000622516 PVRIGQ6DKI7 326 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 TMEM183AQ8IXX5 376 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 OR5R1Q8NH85 324 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 RNASE8Q8TDE3 154 aaKnown RBP8.4□□□□□ -1.06
CUX1-221ENST00000622516 IGF2BP2-AS1Q96M15 143 aa8.4□□□□□ -1.06
CUX1-221ENST00000622516 PEX7O00628 323 aa8.4□□□□□ -1.07
CUX1-221ENST00000622516 NUPR1O60356 82 aa8.4□□□□□ -1.07
CUX1-221ENST00000622516 AMBPP02760 352 aa8.4□□□□□ -1.07
CUX1-221ENST00000622516 EFNA4P52798 201 aa8.4□□□□□ -1.07
CUX1-221ENST00000622516 Q71RC1 249 aaPredicted RBP8.4□□□□□ -1.07
CUX1-221ENST00000622516 RNF2Q99496 336 aa8.4□□□□□ -1.07
CUX1-221ENST00000622516 ABCA12Q86UK0 2595 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 A6NNC1 897 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 CNN1P51911 297 aaKnown RBP8.39□□□□□ -1.07
CUX1-221ENST00000622516 RPEL1Q2QD12 228 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 MRPL54Q6P161 138 aaKnown RBP8.39□□□□□ -1.07
CUX1-221ENST00000622516 BAGE2Q86Y30 109 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 EXOC3-AS1Q8N2X6 119 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 C17orf77Q96MU5 243 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 TRAV8-1A0A0A6YYK1 113 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 ZNF705GA8MUZ8 300 aaPredicted RBP8.39□□□□□ -1.07
CUX1-221ENST00000622516 CORTO00230 105 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 KIAA1644Q3SXP7 199 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 OR1L6Q8NGR2 347 aa8.39□□□□□ -1.07
CUX1-221ENST00000622516 GCGP01275 180 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 RNF5Q99942 180 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 SLC25A39Q9BZJ4 359 aaPredicted RBP8.38□□□□□ -1.07
CUX1-221ENST00000622516 HIGD1AQ9Y241 93 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 ARL2-SNX15V9GYD0 113 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 SNURFLB1AK76 121 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 GP9P14770 177 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 CD33P20138 364 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 NPBQ8NG41 125 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 TXN2Q99757 166 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms