RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 GBF1Q92538 1859 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF146Q15072 292 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 NMSQ5H8A3 153 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ZNRD1Q9P1U0 126 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SH2D1AO60880 128 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PDLIM4P50479 330 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 RHOGP84095 191 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 LINC00596Q86U02 117 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 TMEM126AQ9H061 195 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SPANXB1Q9NS25 103 aaPredicted RBP4.14□□□□□ -1.75
VPS13D-214ENST00000620676 DNAL4O96015 105 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 C8orf49Q96NF6 230 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SPACA3Q8IXA5 215 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SLC22A18ASQ8N1D0 253 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 C20orf78Q9BR46 151 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 IGLL5B9A064 214 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SRD5A2P31213 254 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 NGBQ9NPG2 151 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SCRT2Q9NQ03 307 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PPBPP02775 128 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PMVKQ15126 192 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ATG2BQ96BY7 2078 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 H3BMM0 161 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 EFEMP2O95967 443 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF524Q96C55 264 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PRADC1Q9BSG0 188 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SCNM1Q9BWG6 230 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 FAM90A26D6RGX4 464 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 METRNQ9UJH8 293 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 CADP27708 2225 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 DEFB109BQ30KR1 87 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 PSG7Q13046 419 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 CIRBPQ14011 172 aaKnown RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 PMS2CLQ68D20 193 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 M0R2P5 195 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 COL8A2P25067 703 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 PPP1R27Q86WC6 154 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 RPRMLQ8N4K4 120 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SIGLEC8Q9NYZ4 499 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 PTPRQQ9UMZ3 2332 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 NEU4Q8WWR8 484 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 IGKV1-6A0A0C4DH72 117 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 ARMS2P0C7Q2 107 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF784Q8NCA9 323 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SFXN3Q9BWM7 321 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 TIAF1O95411 115 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 APOBEC3AP31941 199 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 ZC2HC1BQ5TFG8 222 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SLC25A2Q9BXI2 301 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 TNRC6AQ8NDV7 1962 aaKnown RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 NCOR2Q9Y618 2525 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 VGLL1Q99990 258 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 OTORQ9NRC9 128 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 MPC1Q9Y5U8 109 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SAA2-SAA4A0A096LPE2 208 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 IGKV3D-7A0A0C4DH55 119 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SAA2P0DJI9 122 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 ZIC4Q8N9L1 334 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 SPTY2D1-AS1A0A0U1RR47 76 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 NDUFS7O75251 213 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 TOMM40O96008 361 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 FXYD2P54710 66 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 C10orf55Q5SWW7 151 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 DUX4L9Q6RFH8 374 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 NFAM1Q8NET5 270 aaPredicted RBP4.13□□□□□ -1.75
VPS13D-214ENST00000620676 RNF114Q9Y508 228 aa4.13□□□□□ -1.75
VPS13D-214ENST00000620676 AHRRA9YTQ3 701 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 SUMO2P61956 95 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 RNF7Q9UBF6 113 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 RNF115Q9Y4L5 304 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 NYNRINQ9P2P1 1898 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 TINCRA0A1B0GVN0 87 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 IGHMP01871 453 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 TMEM54Q969K7 222 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 UBE2WQ96B02 151 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 PKIGQ9Y2B9 76 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 MRPL51Q4U2R6 128 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 YPEL1O60688 119 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF415Q09FC8 603 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 YPEL2Q96QA6 119 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF831Q5JPB2 1677 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 PDCD11Q14690 1871 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 C15orf62A8K5M9 175 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 RPS20P60866 119 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 C19orf54Q5BKX5 351 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 MTCL1Q9Y4B5 1905 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 MRPS21P82921 87 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 SHANK1Q9Y566 2161 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 SSC5DA1L4H1 1573 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 KLF14Q8TD94 323 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 GATA1P15976 413 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 MRPL32Q9BYC8 188 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 GATA3P23771 443 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 A0A087WWL8 130 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 IGHV1OR21-1A0A087WYE8 117 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 TDRD15B5MCY1 1934 aaKnown RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 PTGDSP41222 190 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 YPEL3P61236 119 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-214ENST00000620676 CCDC168Q8NDH2 2452 aa4.12□□□□□ -1.75
VPS13D-214ENST00000620676 PCNX2A6NKB5 2137 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms