RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 COLCA2A8K830 154 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 RPL15P61313 204 aaKnown RBP12.46□□□□□ -0.41
CPSF1-213ENST00000620219 TMEM95Q3KNT9 176 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 OR10G8Q8NGN5 311 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 TMEM37Q8WXS4 190 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 RPL23P62829 140 aaKnown RBP12.46□□□□□ -0.42
CPSF1-213ENST00000620219 HABP2Q14520 560 aaPredicted RBP12.46□□□□□ -0.42
CPSF1-213ENST00000620219 ASPHD1Q5U4P2 390 aa12.46□□□□□ -0.42
CPSF1-213ENST00000620219 OR5R1Q8NH85 324 aa12.46□□□□□ -0.42
CPSF1-213ENST00000620219 PARD6GQ9BYG4 376 aaPredicted RBP12.46□□□□□ -0.42
CPSF1-213ENST00000620219 TMEM250H0YL14 139 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 TRGC2P03986 189 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 OR5I1Q13606 314 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 GOLT1AQ6ZVE7 132 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 HIST1H1BP16401 226 aaKnown RBP12.45□□□□□ -0.42
CPSF1-213ENST00000620219 METTL26Q96S19 204 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 IGHV7-81A0A0B4J1V7 117 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 ODF3BA8MYP8 253 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 FSTL3O95633 263 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 VWC2Q2TAL6 325 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 SMUG1Q53HV7 270 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 AP4M1O00189 453 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 CTRB1P17538 263 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 FABP9Q0Z7S8 132 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 MORN5Q5VZ52 161 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 CTRB2Q6GPI1 263 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 CLEC5AQ9NY25 188 aa12.45□□□□□ -0.42
CPSF1-213ENST00000620219 LINC01548A6NM66 108 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 CENPWQ5EE01 88 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 Q8N9W7 124 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 LSM4Q9Y4Z0 139 aaKnown RBP12.44□□□□□ -0.42
CPSF1-213ENST00000620219 TMSB15BA0A087X1C1 80 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 GAR1Q9NY12 217 aaKnown RBP12.44□□□□□ -0.42
CPSF1-213ENST00000620219 A0A1B0GW64 132 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 SLC17A3O00476 420 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 CXCL1P09341 107 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 ARL3P36405 182 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 WFDC11Q8NEX6 87 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 CFHR4Q92496 578 aa12.44□□□□□ -0.42
CPSF1-213ENST00000620219 TEX22C9J3V5 150 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 NPPCP23582 126 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 SGMS2Q8NHU3 365 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 PAX8Q06710 450 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 TRGV9Q99603 122 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 LY6LH3BQJ8 138 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 MFAP2P55001 183 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 LINC00479Q96M42 142 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 GATA3P23771 443 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 IGFL4Q6B9Z1 124 aa12.43□□□□□ -0.42
CPSF1-213ENST00000620219 SLC25A39Q9BZJ4 359 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-213ENST00000620219 EXOC3-AS1Q8N2X6 119 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 ZNF600Q6ZNG1 722 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 A0A1W2PRX2 142 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 M0QZK8 103 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 GATCO43716 136 aaKnown RBP12.42□□□□□ -0.42
CPSF1-213ENST00000620219 GBGT1Q8N5D6 347 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 ASCL2Q99929 193 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 NPFFR1Q9GZQ6 430 aa12.42□□□□□ -0.42
CPSF1-213ENST00000620219 PRSS46E5RG02 174 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRR20EP86478 221 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRR20CP86479 221 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRR20DP86480 221 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRR20BP86481 221 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRR20AP86496 221 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PLA2G2AP14555 144 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 RPL7P18124 248 aaKnown RBP12.41□□□□□ -0.42
CPSF1-213ENST00000620219 MRPL54Q6P161 138 aaKnown RBP12.41□□□□□ -0.42
CPSF1-213ENST00000620219 Q9H3A6 140 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 B4DEV8 164 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PAX1P15863 534 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 CAMPP49913 170 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 GRAMD2BQ96HH9 432 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PRSS22Q9GZN4 317 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 SEC14L6B5MCN3 397 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 IGLC1P0CG04 106 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 RPEL1Q2QD12 228 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 PVRIGQ6DKI7 326 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 ZNF114Q8NC26 417 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 NPBQ8NG41 125 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 OCC1Q8TAD7 63 aa12.41□□□□□ -0.42
CPSF1-213ENST00000620219 HLA-DRB1P01911 266 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 SRD5A1P18405 259 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 TXNDC17Q9BRA2 123 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 ZNF331Q9NQX6 463 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-213ENST00000620219 FLNAP21333 2647 aaKnown RBP12.4□□□□□ -0.42
CPSF1-213ENST00000620219 M0QZ24 198 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 ELOBQ15370 118 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 HOXA3O43365 443 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-213ENST00000620219 AVPP01185 164 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 C16orf92Q96LL3 132 aa12.4□□□□□ -0.42
CPSF1-213ENST00000620219 RELQ04864 619 aaPredicted RBP12.39□□□□□ -0.43
CPSF1-213ENST00000620219 AARDQ4LEZ3 155 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 BORCS7Q96B45 105 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 NDFIP1Q9BT67 221 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 FNDC10F2Z333 226 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 PRR31Q5SQ13 230 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 TMEM116Q8NCL8 245 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 ZNF98A6NK75 572 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 K7EIM0 57 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 PEX7O00628 323 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms