RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 G3V318 75 aa13.58□□□□□ -0.23
PCDHGC3-205ENST00000617641 SNRPEP62304 92 aaKnown RBP13.58□□□□□ -0.23
PCDHGC3-205ENST00000617641 RNF125Q96EQ8 232 aa13.58□□□□□ -0.23
PCDHGC3-205ENST00000617641 LINC00479Q96M42 142 aa13.58□□□□□ -0.23
PCDHGC3-205ENST00000617641 LY96Q9Y6Y9 160 aa13.58□□□□□ -0.23
PCDHGC3-205ENST00000617641 ANKRD17O75179 2603 aaKnown RBP13.58□□□□□ -0.24
PCDHGC3-205ENST00000617641 A0A1W2PPQ1 181 aa13.58□□□□□ -0.24
PCDHGC3-205ENST00000617641 TRGC2P03986 189 aa13.58□□□□□ -0.24
PCDHGC3-205ENST00000617641 MYCNOSP40205 109 aa13.58□□□□□ -0.24
PCDHGC3-205ENST00000617641 PYGO2Q9BRQ0 406 aa13.58□□□□□ -0.24
PCDHGC3-205ENST00000617641 A0A096LNT2 108 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 OR2T8A6NH00 312 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 PPP1R2P9O14990 202 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 AMY1AP04745 511 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 YPEL3P61236 119 aaPredicted RBP13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 GNG5P63218 68 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 OR5I1Q13606 314 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 MAPK1IP1LQ8NDC0 245 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 POLQO75417 2590 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 CENPEQ02224 2701 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 WI2-2373I1.2A0A1W2PRP0 233 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 PEX7O00628 323 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 SRP14P37108 136 aaKnown RBP13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 FAM3BP58499 235 aaPredicted RBP13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 BCL6BQ8N143 479 aaPredicted RBP13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 OR10G8Q8NGN5 311 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 IGF2BP2-AS1Q96M15 143 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 SHANK2-AS3Q9BTD1 123 aa13.57□□□□□ -0.24
PCDHGC3-205ENST00000617641 PGPA6NDG6 321 aa13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 LY6EQ16553 131 aa13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 H3BRN7 92 aa13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 SLC25A5P05141 298 aaKnown RBP13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 HIST1H1BP16401 226 aaKnown RBP13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 USF2Q15853 346 aaPredicted RBP13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 GSN-AS1Q9NRJ2 163 aa13.56□□□□□ -0.24
PCDHGC3-205ENST00000617641 TRAV34A0A0B4J273 112 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 C5orf52A6NGY3 159 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 GGCTO75223 188 aaKnown RBP13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 IGLV2-8P01709 118 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 RHOGP84095 191 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 C15orf32Q32M92 178 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 LINC01356Q8N9X3 169 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 ZNF586Q9NXT0 402 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 TMEM14CQ9P0S9 112 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 H3BUX3 64 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 CNN1P51911 297 aaKnown RBP13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 KCNIP4Q6PIL6 250 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 CHRDL1Q9BU40 450 aa13.55□□□□□ -0.24
PCDHGC3-205ENST00000617641 SLC17A3O00476 420 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 CTSGP08311 255 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 FCGR2BP31994 310 aaPredicted RBP13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 NHLRC2Q8NBF2 726 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 VN1R17PQ8TDU5 208 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 Q9H3A6 140 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 LINC00527Q9UJ94 153 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 CDC42EP3Q9UKI2 254 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 EPDR1Q9UM22 224 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 RPH3ALQ9UNE2 315 aa13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.54□□□□□ -0.24
PCDHGC3-205ENST00000617641 HIST1H1EP10412 219 aaKnown RBP13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 GATA3P23771 443 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 C9orf152Q5JTZ5 239 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 SRD5A3Q9H8P0 318 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 TRBV9A0A0B4J1U6 114 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 ISLRO14498 428 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 MGST1P10620 155 aaKnown RBP13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 ADMP35318 185 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 TAS2R60P59551 318 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 ERVFC1-1P60608 527 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 KLK9Q2XQG4 91 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 ZNF502Q8TBZ5 544 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 TMEM68Q96MH6 324 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 MS4A10Q96PG2 267 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 KLK9Q9UKQ9 250 aa13.53□□□□□ -0.24
PCDHGC3-205ENST00000617641 PTPN13Q12923 2485 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 RNF223E7ERA6 249 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 PPP5D1E7EU14 171 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 GPR183P32249 361 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 FRZBQ92765 325 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 IMMP2LQ96T52 175 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 TXN2Q99757 166 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 TCEAL7Q9BRU2 100 aa13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 RNASE7Q9H1E1 156 aaKnown RBP13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 USP9YO00507 2555 aaPredicted RBP13.52□□□□□ -0.24
PCDHGC3-205ENST00000617641 IGHV3-35A0A0C4DH35 117 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 A6NDX4 124 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 AP4M1O00189 453 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 PHOX2AO14813 284 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 TGOLN2O43493 480 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BKO60814 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 GCGP01275 180 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BJP06899 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BOP23527 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BBP33778 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BDP58876 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST1H2BCP62807 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 FABP9Q0Z7S8 132 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST2H2BEQ16778 126 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 C21orf62-AS1Q17RA5 79 aa13.52□□□□□ -0.25
PCDHGC3-205ENST00000617641 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms