RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 OR11H1Q8NG94 326 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 OR1N2Q8NGR9 330 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 OR2G3Q8NGZ4 309 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 Q8WTZ3 238 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 TMED6Q8WW62 240 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 TMEM37Q8WXS4 190 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 GNPNAT1Q96EK6 184 aaPredicted RBP7.2□□□□□ -1.26
TRIM28-208ENST00000597172 RCC1LQ96I51 464 aaKnown RBP7.2□□□□□ -1.26
TRIM28-208ENST00000597172 RAX2Q96IS3 184 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 DUX3Q96PT4 197 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 ZFAND3Q9H8U3 227 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 SLC39A9Q9NUM3 307 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 PUS1Q9Y606 427 aaKnown RBP eCLIP7.2□□□□□ -1.26
TRIM28-208ENST00000597172 HECTD4Q9Y4D8 3996 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 IGHV3OR16-8A0A075B7F1 116 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 NUDT19A8MXV4 375 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 C17orf112F2Z3M2 114 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 LINC01619G3V211 115 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 PLP1P60201 277 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 SERF2P84101 59 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 KLF5Q13887 457 aaPredicted RBP7.19□□□□□ -1.26
TRIM28-208ENST00000597172 NSUN5P1Q3KNT7 163 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 FFAR4Q5NUL3 377 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 TEX261Q6UWH6 196 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 UNQ9165/PRO28630Q6UXU0 137 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 NDUFA11Q86Y39 141 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 OR51G1Q8NGK1 321 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 MRPL27Q9P0M9 148 aaKnown RBP7.19□□□□□ -1.26
TRIM28-208ENST00000597172 ABCA13Q86UQ4 5058 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 MUC4Q99102 2169 aa7.19□□□□□ -1.26
TRIM28-208ENST00000597172 CCL24O00175 119 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 NDUFA4O00483 81 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 SCGB2A1O75556 95 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 IL4P05112 153 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 FABP1P07148 127 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 ORM2P19652 201 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 HOXD3P31249 432 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-208ENST00000597172 SLURP1P55000 103 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 ELLP55199 621 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-208ENST00000597172 RELQ04864 619 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-208ENST00000597172 FHL3Q13643 280 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 USF2Q15853 346 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-208ENST00000597172 ALKAL2Q6UX46 152 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 RPP25LQ8N5L8 163 aaKnown RBP7.18□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF680Q8NEM1 530 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 DPF1Q92782 380 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 RNF125Q96EQ8 232 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 PHYHIPLQ96FC7 376 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 DNAJC4Q9NNZ3 241 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 RPRMQ9NS64 109 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 DOK5Q9P104 306 aa7.18□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF207O43670 478 aaKnown RBP7.17□□□□□ -1.26
TRIM28-208ENST00000597172 HYPMO75409 117 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 CD33P20138 364 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 M6PRP20645 277 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 FHITP49789 147 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 RAB2AP61019 212 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 LYZP61626 148 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 RPEL1Q2QD12 228 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 FAM106AQ4KMX7 169 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 TM4SF20Q53R12 229 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 FAM74A1Q5RGS3 127 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 PXDC1Q5TGL8 231 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 MORN5Q5VZ52 161 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 ADAMTSL5Q6ZMM2 481 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 Q6ZRG5 221 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 WFDC9Q8NEX5 89 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 OR1B1Q8NGR6 318 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 TMEM190Q8WZ59 177 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 DLX4Q92988 240 aaPredicted RBP7.17□□□□□ -1.26
TRIM28-208ENST00000597172 KCNIP2Q9NS61 270 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 U3KQE9 123 aa7.17□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF320A2RRD8 509 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 K7EMT4 169 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 LGALS9O00182 355 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 EIF3GO75821 320 aaKnown RBP eCLIP7.16□□□□□ -1.26
TRIM28-208ENST00000597172 MBP02144 154 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 APOHP02749 345 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR5G3P0C626 314 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 EDN2P20800 178 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 ZP3P21754 424 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 CRYBB3P26998 211 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 MYCNOSP40205 109 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 SULT1A2P50226 295 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 SYNJ2BPP57105 145 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF726P1Q15940 193 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 ACOT6Q3I5F7 207 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-208ENST00000597172 TMEM41BQ5BJD5 291 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 C10orf113Q5VZT2 155 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 SPATA31B1PQ5VZV4 182 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 ZFAND6Q6FIF0 208 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 EIF5AL1Q6IS14 154 aaKnown RBP7.16□□□□□ -1.26
TRIM28-208ENST00000597172 SSX7Q7RTT5 188 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR4F17Q8NGA8 305 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR10G4Q8NGN3 311 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR10G9Q8NGN4 311 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR10G7Q8NGN6 311 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 OR1L4Q8NGR5 311 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 GATAD1Q8WUU5 269 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 UHRF2Q96PU4 802 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms