RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 WIPF2Q8TF74 440 aaPredicted RBP10.1□□□□□ -0.79
LIG1-207ENST00000594759 ZNF256Q9Y2P7 627 aaPredicted RBP10.1□□□□□ -0.79
LIG1-207ENST00000594759 FMC1Q96HJ9 113 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 SPAG8Q99932 426 aaPredicted RBP10.1□□□□□ -0.79
LIG1-207ENST00000594759 HES7Q9BYE0 225 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 IFI27L2Q9H2X8 130 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 CACNA1BQ00975 2339 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 GFRA3O60609 400 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 IFI27P40305 119 aaPredicted RBP10.1□□□□□ -0.79
LIG1-207ENST00000594759 NEGR1Q7Z3B1 354 aa10.1□□□□□ -0.79
LIG1-207ENST00000594759 VDAC2P45880 294 aaPredicted RBP10.09□□□□□ -0.79
LIG1-207ENST00000594759 HERVK_113P61574 105 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 SLC25A53Q5H9E4 307 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 PCP2Q8IVA1 136 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 NFAM1Q8NET5 270 aaPredicted RBP10.09□□□□□ -0.79
LIG1-207ENST00000594759 OR10X1Q8NGY0 326 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 TRBV6-6A0A0A6YYG2 114 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 TRAV8-1A0A0A6YYK1 113 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 IGHV3-21A0A0B4J1V1 117 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 C2orf83Q53S99 150 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 KLF17Q5JT82 389 aaPredicted RBP10.09□□□□□ -0.79
LIG1-207ENST00000594759 ZC2HC1BQ5TFG8 222 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 HARBI1Q96MB7 349 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 ZNF747Q9BV97 191 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 PGPEP1Q9NXJ5 209 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 TRBV20-1A0A075B6N2 111 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 LEPP41159 167 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 IGHV1-45A0A0A0MS14 117 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 ACP1P24666 158 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 LINC01545Q5VT33 79 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 SLC25A48Q6ZT89 311 aaKnown RBP10.09□□□□□ -0.79
LIG1-207ENST00000594759 FAM231DQ6ZW35 169 aa10.09□□□□□ -0.79
LIG1-207ENST00000594759 NDUFA3O95167 84 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 IGLV3-1P01715 115 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 FOXI2Q6ZQN5 318 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 PPDPFLQ8WWR9 84 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 RND1Q92730 232 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 JMJD8Q96S16 334 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 D6R8Y8 96 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 LYZL6O75951 148 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 ATP5LO75964 103 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 RNPS1Q15287 305 aaKnown RBP10.08□□□□□ -0.8
LIG1-207ENST00000594759 ZNF295-AS1Q8N0V1 137 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 UNC80Q8N2C7 3258 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 CD40P25942 277 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 PCOLCEQ15113 449 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 LGALS9BQ3B8N2 356 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 VMA21Q3ZAQ7 101 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 LGALS9CQ6DKI2 356 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 LEAP2Q969E1 77 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 HIGD1AQ9Y241 93 aa10.08□□□□□ -0.8
LIG1-207ENST00000594759 FOXF2Q12947 444 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 ALKBH6Q3KRA9 238 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 DTX1Q86Y01 620 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 C10orf126Q8N4M7 172 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 CXXC4Q9H2H0 198 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 SPANXA1Q9NS26 97 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 LINC00473A8K010 186 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 NPIPB11E5RHQ5 1161 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 M0R3E3 92 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 FOXC1Q12948 553 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 TMEM105Q8N8V8 129 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 KLK15Q9H2R5 256 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 PRSS29PA6NIE9 313 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 PRR33A8MZF0 331 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 DUTP33316 252 aaKnown RBP10.07□□□□□ -0.8
LIG1-207ENST00000594759 ATP5IP56385 69 aaPredicted RBP10.07□□□□□ -0.8
LIG1-207ENST00000594759 Q6AWC8 147 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 C1QTNF4Q9BXJ3 329 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 C1RLQ9NZP8 487 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 KIAA1549Q9HCM3 1950 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 PIEZO2Q9H5I5 2752 aa10.07□□□□□ -0.8
LIG1-207ENST00000594759 TRAV3A0A0B4J244 114 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 WNT9BO14905 357 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 COX6A1P12074 109 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 PRDX2P32119 198 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 OR13A1Q8NGR1 328 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 C20orf78Q9BR46 151 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 DCTN5Q9BTE1 182 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 BEX4Q9NWD9 120 aaPredicted RBP10.06□□□□□ -0.8
LIG1-207ENST00000594759 TRBV7-9A0A0J9YWB2 115 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 DLX1P56177 255 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 OBSL1O75147 1896 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 C15orf61A6NNL5 157 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 NPIPB6E9PJ23 425 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 APELAP0DMC3 54 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 MPV17P39210 176 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 ACP7Q6ZNF0 438 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 Q9H3A6 140 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 PRUNE2Q8WUY3 3088 aa10.06□□□□□ -0.8
LIG1-207ENST00000594759 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.05□□□□□ -0.8
LIG1-207ENST00000594759 TSPAN13O95857 204 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 RFPL3SP0C7P2 107 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 IFITM1P13164 125 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 FXYD2P54710 66 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 RAXQ9Y2V3 346 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 PRRC2CQ9Y520 2896 aaKnown RBP10.05□□□□□ -0.8
LIG1-207ENST00000594759 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.05□□□□□ -0.8
LIG1-207ENST00000594759 ONECUT1Q9UBC0 465 aa10.05□□□□□ -0.8
LIG1-207ENST00000594759 KLF12Q9Y4X4 402 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms