RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 TRGV3P03979 118 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 CD5P06127 495 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 STAG3L2P0CL84 134 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 STAG3L3P0CL85 134 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 CD28P10747 220 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 PSMB8P28062 276 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 YPEL3P61236 119 aaPredicted RBP8.07□□□□□ -1.12
VPS4B-204ENST00000589604 MIR17HGQ75NE6 70 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 FAM223AQ8IWN6 122 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 COMMD1Q8N668 190 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 FAM210AQ96ND0 272 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 TMPRSS5Q9H3S3 457 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 DNAJC4Q9NNZ3 241 aa8.07□□□□□ -1.12
VPS4B-204ENST00000589604 TRAV30A0A087WSZ9 112 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 A0A1B0GUS0 222 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 WI2-2373I1.2A0A1W2PRP0 233 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 OR2T8A6NH00 312 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 GNG7O60262 68 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 TOMM40O96008 361 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 HBE1P02100 147 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 RHOBP62745 196 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 Q56UQ5 140 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 C12orf54Q6X4T0 127 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF491Q8N8L2 437 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 GATAD1Q8WUU5 269 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF503Q96F45 646 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 FAM167A-AS1Q96KT0 104 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 CITED1Q99966 193 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF747Q9BV97 191 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 FUT9Q9Y231 359 aa8.06□□□□□ -1.12
VPS4B-204ENST00000589604 TRBV7-1A0A0A6YYK4 115 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 A0A1W2PPV4 95 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 CLEC3BP05452 202 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 RD3LP0DJH9 198 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 RAB9AP51151 201 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 TPPP2P59282 170 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 ATP5G2Q06055 141 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 FAM78BQ5VT40 261 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 OR5AU1Q8NGC0 362 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 EEF1AKMT3Q96AZ1 226 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 ATP6V0BQ99437 205 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 RARRES2Q99969 163 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 TMEM231Q9H6L2 316 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 MRPL27Q9P0M9 148 aaKnown RBP8.05□□□□□ -1.12
VPS4B-204ENST00000589604 DOK5Q9P104 306 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 TRAV5A0A0B4J249 113 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 OR2C1O95371 312 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 ARL14EPLP0DKL9 152 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 GPR183P32249 361 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 GUK1Q16774 197 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 C10orf113Q5VZT2 155 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 UQCC3Q6UW78 93 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 CLEC19AQ6UXS0 136 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 C18orf65Q6ZTR6 163 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 C3orf56Q8N813 242 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 OR1L4Q8NGR5 311 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 MYOZ3Q8TDC0 251 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 USMG5Q96IX5 58 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 UHRF2Q96PU4 802 aa8.05□□□□□ -1.12
VPS4B-204ENST00000589604 ELOA3CA0A087WX78 387 aaPredicted RBP8.04□□□□□ -1.12
VPS4B-204ENST00000589604 RBFOX3A6NFN3 312 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 COX7A2P2O60397 106 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 HYPMO75409 117 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 TRBV12-3P01733 135 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 ORM2P19652 201 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 ICAM4Q14773 271 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF506Q5JVG8 444 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 ZNF343Q6P1L6 599 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 OR51G1Q8NGK1 321 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 OR1B1Q8NGR6 318 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 SUN5Q8TC36 379 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 PFDN5Q99471 154 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 RNF2Q99496 336 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 CITED2Q99967 270 aaPredicted RBP8.04□□□□□ -1.12
VPS4B-204ENST00000589604 SLC25A2Q9BXI2 301 aa8.04□□□□□ -1.12
VPS4B-204ENST00000589604 MRPL32Q9BYC8 188 aaKnown RBP8.04□□□□□ -1.12
VPS4B-204ENST00000589604 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.03□□□□□ -1.12
VPS4B-204ENST00000589604 LOC102723971A0A1B0GUV8 181 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 I3L521 148 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 TGOLN2O43493 480 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 C8orf88P0DMB2 117 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 GCHFRP30047 84 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 LYZP61626 148 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 FOXE3Q13461 319 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 USF2Q15853 346 aaPredicted RBP8.03□□□□□ -1.12
VPS4B-204ENST00000589604 HAGHQ16775 308 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 LINC00305Q7Z4B0 112 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 RNF125Q96EQ8 232 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 LINC00052Q96N35 136 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 GNG13Q9P2W3 67 aa8.03□□□□□ -1.12
VPS4B-204ENST00000589604 CMYA5Q8N3K9 4069 aa8.02□□□□□ -1.12
VPS4B-204ENST00000589604 TMEM218A2RU14 115 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 PPP5D1E7EU14 171 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 NUPL2O15504 423 aaKnown RBP8.02□□□□□ -1.13
VPS4B-204ENST00000589604 CXorf1O96002 111 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 IL4P05112 153 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 FABP1P07148 127 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 S100A1P23297 94 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 TOMM20LQ6UXN7 152 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 ZNF600Q6ZNG1 722 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms