RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 RUNX1Q01196 453 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 ZNF90Q03938 601 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 RELQ04864 619 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 ZNF616Q08AN1 781 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 TCTEX1D4Q5JR98 221 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 HIST2H2BDQ6DRA6 164 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 EIF5AL1Q6IS14 154 aaKnown RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 ZNF343Q6P1L6 599 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 SPSB3Q6PJ21 355 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 Q6ZRG5 221 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 CYP2G1PQ6ZSU1 146 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 C18orf65Q6ZTR6 163 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 LURAP1LQ8IV03 231 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 BAP18Q8IXM2 172 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 THAP8Q8NA92 274 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 BPIFCQ8NFQ6 507 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 MYOZ3Q8TDC0 251 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 WIPF2Q8TF74 440 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 Q8WTZ3 238 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 C4orf3Q8WVX3 66 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 DPF1Q92782 380 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 GNPNAT1Q96EK6 184 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 ATP6V0BQ99437 205 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 TRGV9Q99603 122 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 MGST2Q99735 147 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 RSG1Q9BU20 258 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 GGTLC1Q9BX51 225 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 PARD6GQ9BYG4 376 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 SLC25A32Q9H2D1 315 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 CYTL1Q9NRR1 136 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 LSM4Q9Y4Z0 139 aaKnown RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 PXMP4Q9Y6I8 212 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 IGKV1D-37A0A075B6S9 117 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 IGHV4OR15-8A0A075B7B6 117 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 IGKV1OR2-108A0A075B7D4 117 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 A0A087WW49 117 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3-35A0A0C4DH35 117 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 ZNF320A2RRD8 509 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR2C1O95371 312 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 TOMM40O96008 361 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 CFDP00746 253 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 HSPB1P04792 205 aaKnown RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 CTSGP08311 255 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR5G3P0C626 314 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 LINC00869P0C866 280 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 PSG1P11464 419 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 BTF3P20290 206 aaKnown RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 MALP21145 153 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 ZP3P21754 424 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 GATA2P23769 480 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 YPEL3P61236 119 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 LYZP61626 148 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 B2MP61769 119 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 SELENOTP62341 195 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 KIAA0141Q14154 515 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 RPEL1Q2QD12 228 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 DEFB136Q30KP8 78 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 NSUN5P1Q3KNT7 163 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 FFAR4Q5NUL3 377 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 AKR1C8PQ5T2L2 129 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 MIC13Q5XKP0 118 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 C12orf54Q6X4T0 127 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 ZNF600Q6ZNG1 722 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 TMEM182Q6ZP80 229 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 C3orf56Q8N813 242 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR11H1Q8NG94 326 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR51G1Q8NGK1 321 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR1B1Q8NGR6 318 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR1N2Q8NGR9 330 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 OR2G3Q8NGZ4 309 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 STOML3Q8TAV4 291 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 NEU1Q99519 415 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 GINS3Q9BRX5 216 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 PSMG3Q9BT73 122 aaPredicted RBP4.08□□□□□ -1.76
LIG3-210ENST00000588109 CHRDL1Q9BU40 450 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 C20orf24Q9BUV8 137 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 PBDC1Q9BVG4 233 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 SH3BGRL3Q9H299 93 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 DOK5Q9P104 306 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 SLC45A2Q9UMX9 530 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 TIMM9Q9Y5J7 89 aa4.08□□□□□ -1.76
LIG3-210ENST00000588109 PUS1Q9Y606 427 aaKnown RBP eCLIP4.08□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3OR16-8A0A075B7F1 116 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 LINC01619G3V211 115 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 I3L521 148 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 CCL24O00175 119 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 BMPR1BO00238 502 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 NDUFA4O00483 81 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 COX7A2P2O60397 106 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 HYPMO75409 117 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 IGKV1-17P01599 117 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 MBP02144 154 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 IL4P05112 153 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 SEC11BP0C7V7 166 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 SPP1P10451 314 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 ORM2P19652 201 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 S100A7P31151 101 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 HOXD3P31249 432 aaPredicted RBP4.07□□□□□ -1.76
LIG3-210ENST00000588109 RPL29P47914 159 aaKnown RBP4.07□□□□□ -1.76
LIG3-210ENST00000588109 KRTAP10-3P60369 221 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms