RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 GATAD1Q8WUU5 269 aa7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 TMEM37Q8WXS4 190 aa7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 RNF125Q96EQ8 232 aa7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 SAT2Q96F10 170 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 PFDN5Q99471 154 aa7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 RNF2Q99496 336 aa7.57□□□□□ -1.2
SMCHD1-212ENST00000585229 HSPB1P04792 205 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 NMBP08949 121 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 FHL3Q13643 280 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 USF2Q15853 346 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 ZNF726P1Q15940 193 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 AWAT1Q58HT5 328 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 GCSAMLQ5JQS6 135 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 TOMM20LQ6UXN7 152 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 C18orf65Q6ZTR6 163 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 OR10G4Q8NGN3 311 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 OR10G9Q8NGN4 311 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 OR10G7Q8NGN6 311 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 MBD3L1Q8WWY6 194 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 TMEM190Q8WZ59 177 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 CITED2Q99967 270 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 MRPL32Q9BYC8 188 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 DNAJC4Q9NNZ3 241 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 PUS1Q9Y606 427 aaKnown RBP eCLIP7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 ATRQ13535 2644 aa7.56□□□□□ -1.2
SMCHD1-212ENST00000585229 IGHV4OR15-8A0A075B7B6 117 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 A0A087WW49 117 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 TRAV1-1A0A0B4J248 108 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 CTXND1A0A1B0GTU2 59 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 H3BRN7 92 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 PAX4O43316 350 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 COX7A2P2O60397 106 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 HYPMO75409 117 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 IL4P05112 153 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 ZP3P21754 424 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 CDC34P49427 236 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 LYZP61626 148 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 RHOBP62745 196 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 BLOC1S1P78537 153 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 CLLU1Q5K131 121 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 SSX7Q7RTT5 188 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 NDUFA11Q86Y39 141 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 KLHL30-AS1Q8NEE0 82 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 LYPD6BQ8NI32 183 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 OR5B12Q96R08 314 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 CITED1Q99966 193 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 ACTR3CQ9C0K3 210 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 TECRQ9NZ01 308 aaKnown RBP7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 FUT9Q9Y231 359 aa7.55□□□□□ -1.2
SMCHD1-212ENST00000585229 A8MWP6 167 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 LINC01619G3V211 115 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 K7EMT4 169 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 LGALS9O00182 355 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 STAG3L2P0CL84 134 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 STAG3L3P0CL85 134 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 CRYBB3P26998 211 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 FHITP49789 147 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 C10orf113Q5VZT2 155 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 FAM122CQ6P4D5 195 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 UNQ9165/PRO28630Q6UXU0 137 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 OR1B1Q8NGR6 318 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 FAM213BQ8TBF2 198 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 RAB24Q969Q5 203 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 SHANK2-AS3Q9BTD1 123 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 HIGD1AQ9Y241 93 aa7.54□□□□□ -1.2
SMCHD1-212ENST00000585229 TENM1Q9UKZ4 2725 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 IGHV3-35A0A0C4DH35 117 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 ZNF705EA8MWA4 302 aaPredicted RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 ORM2P19652 201 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 S100A7P31151 101 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 HOXD3P31249 432 aaPredicted RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 RPL11P62913 178 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 KLF5Q13887 457 aaPredicted RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 RPEL1Q2QD12 228 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 FAM106AQ4KMX7 169 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 KHDC1LQ5JSQ8 128 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 FAM78BQ5VT40 261 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 MORN5Q5VZ52 161 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 SPATA31B1PQ5VZV4 182 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 S100A7AQ86SG5 101 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 C1QL4Q86Z23 238 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 OR11H1Q8NG94 326 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 OR1N2Q8NGR9 330 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 RAX2Q96IS3 184 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 FAM167A-AS1Q96KT0 104 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 SLC25A39Q9BZJ4 359 aaPredicted RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 SLC25A22Q9H936 323 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 SEPSECSQ9HD40 501 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 DOK5Q9P104 306 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 RABAC1Q9UI14 185 aa7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 FBN1P35555 2871 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-212ENST00000585229 A0A1W2PPV4 95 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 MAP1LC3B2A6NCE7 125 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 NUDT19A8MXV4 375 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 HBE1P02100 147 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 C8orf88P0DMB2 117 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 TAS2R45P59539 299 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 PMS2P11Q13670 270 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 DEFB136Q30KP8 78 aa7.52□□□□□ -1.21
SMCHD1-212ENST00000585229 KHDC3LQ587J8 217 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms