RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 Q86TA4 180 aa9.78□□□□□ -0.84
SHMT1-208ENST00000582352 DEFB123Q8N688 67 aa9.78□□□□□ -0.84
SHMT1-208ENST00000582352 C8orf31Q8N9H6 132 aa9.78□□□□□ -0.84
SHMT1-208ENST00000582352 MAP1LC3CQ9BXW4 147 aa9.78□□□□□ -0.84
SHMT1-208ENST00000582352 FAM231BA6NCW3 169 aa9.77□□□□□ -0.84
SHMT1-208ENST00000582352 FCN3O75636 299 aa9.77□□□□□ -0.84
SHMT1-208ENST00000582352 RPL27AP46776 148 aaKnown RBP9.77□□□□□ -0.84
SHMT1-208ENST00000582352 LGALS7P47929 136 aa9.77□□□□□ -0.84
SHMT1-208ENST00000582352 VAMP3Q15836 100 aa9.77□□□□□ -0.84
SHMT1-208ENST00000582352 TMEM116Q8NCL8 245 aa9.77□□□□□ -0.84
SHMT1-208ENST00000582352 IGHV3-72A0A0B4J1Y9 119 aa9.77□□□□□ -0.85
SHMT1-208ENST00000582352 OR5AL1P0C617 328 aa9.77□□□□□ -0.85
SHMT1-208ENST00000582352 C8orf46Q8TAG6 207 aa9.77□□□□□ -0.85
SHMT1-208ENST00000582352 NDFIP1Q9BT67 221 aa9.77□□□□□ -0.85
SHMT1-208ENST00000582352 HIGD1AQ9Y241 93 aa9.77□□□□□ -0.85
SHMT1-208ENST00000582352 H0Y8G0 127 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 CCL17Q92583 94 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 RITA1Q96K30 269 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 OTORQ9NRC9 128 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 HSPB8Q9UJY1 196 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.76□□□□□ -0.85
SHMT1-208ENST00000582352 TRAV8-1A0A0A6YYK1 113 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 TMEM178BH3BS89 294 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 HTR1DP28221 377 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 LYZP61626 148 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 ADIPOQQ15848 244 aa9.76□□□□□ -0.85
SHMT1-208ENST00000582352 NPIPB6E9PJ23 425 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 K7EP13 123 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 TOX4O94842 621 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 NUDT3O95989 172 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 FTH1P19P0C7X4 201 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 RBX1P62877 108 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 PET117Q6UWS5 81 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 PRNTQ86SH4 94 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 WFDC8Q8IUA0 241 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 CIARTQ8N365 385 aaPredicted RBP9.75□□□□□ -0.85
SHMT1-208ENST00000582352 LOC105371242A0A075B767 164 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 CEACAM4O75871 244 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 MRGPRG-AS1Q2M3A8 158 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 LYPD2Q6UXB3 125 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 GOLT1AQ6ZVE7 132 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 TEX45Q8NA69 505 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 TIMM8BQ9Y5J9 83 aaPredicted RBP9.75□□□□□ -0.85
SHMT1-208ENST00000582352 SPAARA0A1B0GVQ0 90 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 HAX1O00165 279 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 ZNF138P52744 262 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 PLP1P60201 277 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 PVRIGQ6DKI7 326 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 C12orf54Q6X4T0 127 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 ASCL5Q7RTU5 278 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 DEFB124Q8NES8 71 aa9.75□□□□□ -0.85
SHMT1-208ENST00000582352 TRAV30A0A087WSZ9 112 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 CSN3P07498 182 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 LOXP28300 417 aaPredicted RBP9.74□□□□□ -0.85
SHMT1-208ENST00000582352 GSX1Q9H4S2 264 aaPredicted RBP9.74□□□□□ -0.85
SHMT1-208ENST00000582352 BDP1A6H8Y1 2624 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 IGHV1-8P0DP01 117 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 CEACAM8P31997 349 aaPredicted RBP9.74□□□□□ -0.85
SHMT1-208ENST00000582352 BVES-AS1Q5T3Y7 98 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 ERASQ7Z444 233 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 EXOC3-AS1Q8N2X6 119 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 SCRT2Q9NQ03 307 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 ROS1P08922 2347 aa9.74□□□□□ -0.85
SHMT1-208ENST00000582352 SMG1Q96Q15 3661 aaKnown RBP9.73□□□□□ -0.85
SHMT1-208ENST00000582352 A0A1B0GUT8 65 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 PSG1P11464 419 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 TMEM155Q4W5P6 130 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 SLC25A39Q9BZJ4 359 aaPredicted RBP9.73□□□□□ -0.85
SHMT1-208ENST00000582352 CTSZQ9UBR2 303 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 F11RQ9Y624 299 aaKnown RBP9.73□□□□□ -0.85
SHMT1-208ENST00000582352 MUC21A0A0G2JKD1 596 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 MUC21A0A140T8X8 626 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 HLA-DRB1P01911 266 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 CNTFRP26992 372 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 DLX6P56179 175 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 BSPH1Q075Z2 132 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 MUC21Q5SSG8 566 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 TMUB1Q9BVT8 246 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 MS4A6AQ9H2W1 248 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 TMEM14CQ9P0S9 112 aa9.73□□□□□ -0.85
SHMT1-208ENST00000582352 TAX1BP3O14907 124 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 APOHP02749 345 aaPredicted RBP9.72□□□□□ -0.85
SHMT1-208ENST00000582352 SRSF12Q8WXF0 261 aaKnown RBP9.72□□□□□ -0.85
SHMT1-208ENST00000582352 RASL11BQ9BPW5 248 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 MCRIP2Q9BUT9 160 aaKnown RBP9.72□□□□□ -0.85
SHMT1-208ENST00000582352 TMEM133Q9H2Q1 129 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 AP5S1Q9NUS5 200 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 SIGLEC9Q9Y336 463 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 C16orf97H3BN30 126 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 IGLV2-11P01706 119 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 IGLC1P0CG04 106 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 RIGQ13278 110 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 IGFL3Q6UXB1 125 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 DEFB125Q8N687 156 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 CEP250Q9BV73 2442 aa9.72□□□□□ -0.85
SHMT1-208ENST00000582352 RBP4P02753 201 aa9.71□□□□□ -0.85
SHMT1-208ENST00000582352 ARMS2P0C7Q2 107 aa9.71□□□□□ -0.85
SHMT1-208ENST00000582352 CDKN1BP46527 198 aa9.71□□□□□ -0.85
SHMT1-208ENST00000582352 HIST1H1AQ02539 215 aaPredicted RBP9.71□□□□□ -0.85
SHMT1-208ENST00000582352 PAX2Q02962 417 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms