RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 GRINAQ7Z429 371 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 SLC25A40Q8TBP6 338 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 YPEL2Q96QA6 119 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 IDI2-AS1Q9NZ38 188 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 SCN10AQ9Y5Y9 1956 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 A8MWV9 139 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 K7EIL1 84 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 CD2P06729 351 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 C8GP07360 202 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 KDELR1P24390 212 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 Q6Q795 121 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 LY96Q9Y6Y9 160 aa0.1□□□□□ -2.39
SS18-214ENST00000580003 F8W1H4 67 aa0.09□□□□□ -2.4
SS18-214ENST00000580003 FOXA3P55318 350 aaPredicted RBP0.09□□□□□ -2.4
SS18-214ENST00000580003 ZNF833PQ6ZTB9 187 aa0.09□□□□□ -2.4
SS18-214ENST00000580003 TRIM4Q9C037 500 aa0.09□□□□□ -2.4
SS18-214ENST00000580003 TMEM133Q9H2Q1 129 aa0.09□□□□□ -2.4
SS18-214ENST00000580003 TMEM138Q9NPI0 162 aa0.09□□□□□ -2.4
SS18-214ENST00000580003 TRAV10A0A0B4J240 114 aa0.08□□□□□ -2.4
SS18-214ENST00000580003 MYL5Q02045 173 aa0.08□□□□□ -2.4
SS18-214ENST00000580003 IMPG1Q17R60 797 aa0.08□□□□□ -2.4
SS18-214ENST00000580003 PCTPQ9UKL6 214 aa0.08□□□□□ -2.4
SS18-214ENST00000580003 RNF11Q9Y3C5 154 aa0.08□□□□□ -2.4
SS18-214ENST00000580003 ARHGEF28Q8N1W1 1705 aaKnown RBP0.07□□□□□ -2.4
SS18-214ENST00000580003 SMIM9A6NGZ8 99 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 COX7CP15954 63 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 RNASE4P34096 147 aaKnown RBP0.07□□□□□ -2.4
SS18-214ENST00000580003 ZNF137PP52743 207 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 DSCR4P56555 118 aaPredicted RBP0.07□□□□□ -2.4
SS18-214ENST00000580003 HIST1H3AP68431 136 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 H3F3AP84243 136 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 KRR1Q13601 381 aaKnown RBP0.07□□□□□ -2.4
SS18-214ENST00000580003 EDDM3AQ14507 147 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 UQCC1Q9NVA1 299 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 HSPB8Q9UJY1 196 aa0.07□□□□□ -2.4
SS18-214ENST00000580003 HEATR1Q9H583 2144 aaKnown RBP0.07□□□□□ -2.4
SS18-214ENST00000580003 NCOA1Q15788 1441 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 A0A087WUJ7 227 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 E7EUB6 86 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 ERC2-IT1O76042 136 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 TRAPPC5Q8IUR0 188 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 OR5D14Q8NGL3 314 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 MYH10P35580 1976 aa0.06□□□□□ -2.4
SS18-214ENST00000580003 PHRF1Q9P1Y6 1649 aaKnown RBP0.05□□□□□ -2.4
SS18-214ENST00000580003 KPNA3O00505 521 aaPredicted RBP0.05□□□□□ -2.4
SS18-214ENST00000580003 SRIP30626 198 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 CEBPGP53567 150 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 SPATA45Q537H7 98 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 C22orf39Q6P5X5 142 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 PDZD9Q8IXQ8 264 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 CCDC42Q96M95 316 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 RNASE7Q9H1E1 156 aaKnown RBP0.05□□□□□ -2.4
SS18-214ENST00000580003 GLTPQ9NZD2 209 aa0.05□□□□□ -2.4
SS18-214ENST00000580003 MYO18AQ92614 2054 aaKnown RBP0.05□□□□□ -2.4
SS18-214ENST00000580003 CECR2Q9BXF3 1484 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 TNCP24821 2201 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 C17orf112F2Z3M2 114 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 PDE6DO43924 150 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 DEFA3P59666 94 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 BCL2L15Q5TBC7 163 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 OR10K1Q8NGX5 313 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 SLC25A21Q9BQT8 299 aaPredicted RBP0.04□□□□□ -2.4
SS18-214ENST00000580003 PBOV1Q9GZY1 135 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 FMN1Q68DA7 1419 aa0.04□□□□□ -2.4
SS18-214ENST00000580003 NDUFB3O43676 98 aa0.03□□□□□ -2.4
SS18-214ENST00000580003 CXCL8P10145 99 aa0.03□□□□□ -2.4
SS18-214ENST00000580003 C6orf52Q5T4I8 152 aa0.03□□□□□ -2.4
SS18-214ENST00000580003 SPINK6Q6UWN8 80 aa0.03□□□□□ -2.4
SS18-214ENST00000580003 OR10AG1Q8NH19 301 aa0.03□□□□□ -2.4
SS18-214ENST00000580003 ASH1LQ9NR48 2969 aaKnown RBP0.02□□□□□ -2.41
SS18-214ENST00000580003 TRBV30A0A0K0K1B3 111 aa0.02□□□□□ -2.41
SS18-214ENST00000580003 RPP14O95059 124 aaKnown RBP0.02□□□□□ -2.41
SS18-214ENST00000580003 ROMO1P60602 79 aa0.02□□□□□ -2.41
SS18-214ENST00000580003 RANP62826 216 aaKnown RBP0.02□□□□□ -2.41
SS18-214ENST00000580003 OR51A2Q8NGJ7 313 aa0.02□□□□□ -2.41
SS18-214ENST00000580003 MUCL1Q96DR8 90 aa0.02□□□□□ -2.41
SS18-214ENST00000580003 TMEM126AQ9H061 195 aa0.02□□□□□ -2.41
SS18-214ENST00000580003 CHD3Q12873 2000 aaKnown RBP0.02□□□□□ -2.41
SS18-214ENST00000580003 A0A087WSZ3 146 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 SPINT3P49223 89 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 CDK6Q00534 326 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 RRN3P1Q2M238 152 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 TCEAL2Q9H3H9 227 aaPredicted RBP0.01□□□□□ -2.41
SS18-214ENST00000580003 UCK1Q9HA47 277 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.01□□□□□ -2.41
SS18-214ENST00000580003 OR52A1Q9UKL2 312 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 MUC4Q99102 2169 aa0.01□□□□□ -2.41
SS18-214ENST00000580003 JMJD7-PLA2G4BH0Y9G9 81 aa0□□□□□ -2.41
SS18-214ENST00000580003 ARHGEF11O15085 1522 aa0□□□□□ -2.41
SS18-214ENST00000580003 GGCTO75223 188 aaKnown RBP0□□□□□ -2.41
SS18-214ENST00000580003 PIK3C2GO75747 1445 aa0□□□□□ -2.41
SS18-214ENST00000580003 OR10J4P0C629 311 aa0□□□□□ -2.41
SS18-214ENST00000580003 TMEM97Q5BJF2 176 aa0□□□□□ -2.41
SS18-214ENST00000580003 PTRHD1Q6GMV3 140 aaKnown RBP0□□□□□ -2.41
SS18-214ENST00000580003 OR5AS1Q8N127 324 aa0□□□□□ -2.41
SS18-214ENST00000580003 STAG3L4Q8TBR4 150 aa0□□□□□ -2.41
SS18-214ENST00000580003 GNPDA2Q8TDQ7 276 aa0□□□□□ -2.41
SS18-214ENST00000580003 IMUPQ9GZP8 106 aa0□□□□□ -2.41
SS18-214ENST00000580003 WFDC10AQ9H1F0 79 aa0□□□□□ -2.41
SS18-214ENST00000580003 PARVBQ9HBI1 364 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms