RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RRAS2P62070 204 aaPredicted RBP17.51■□□□□ 0.39
SHMT1-206ENST00000579558 SEPSECSQ9HD40 501 aaKnown RBP17.51■□□□□ 0.39
SHMT1-206ENST00000579558 AGRNO00468 2067 aa17.51■□□□□ 0.39
SHMT1-206ENST00000579558 DLK1P80370 383 aa17.5■□□□□ 0.39
SHMT1-206ENST00000579558 TMEM182Q6ZP80 229 aaPredicted RBP17.5■□□□□ 0.39
SHMT1-206ENST00000579558 OR10P1Q8NGE3 313 aa17.5■□□□□ 0.39
SHMT1-206ENST00000579558 RARRES2Q99969 163 aa17.5■□□□□ 0.39
SHMT1-206ENST00000579558 SACSQ9NZJ4 4579 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 ORM2P19652 201 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 CYP2G1PQ6ZSU1 146 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 OR8I2Q8N0Y5 310 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 ENKURQ8TC29 256 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 SLC45A2Q9UMX9 530 aa17.49■□□□□ 0.39
SHMT1-206ENST00000579558 LSM5Q9Y4Y9 91 aaKnown RBP17.49■□□□□ 0.39
SHMT1-206ENST00000579558 C7orf66A4D0T2 115 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 L7N2F9 121 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 SPP1P10451 314 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 VAMP2P63027 116 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 EWSR1Q01844 656 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHMT1-206ENST00000579558 MORN3Q6PF18 240 aaPredicted RBP17.48■□□□□ 0.39
SHMT1-206ENST00000579558 OR1B1Q8NGR6 318 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 OR11H2Q8NH07 326 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 TMEM147Q9BVK8 224 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 MGAT4CQ9UBM8 478 aa17.48■□□□□ 0.39
SHMT1-206ENST00000579558 IL5P05113 134 aa17.47■□□□□ 0.39
SHMT1-206ENST00000579558 TMEM217Q8N7C4 229 aa17.47■□□□□ 0.39
SHMT1-206ENST00000579558 C2orf50Q96LR7 162 aa17.47■□□□□ 0.39
SHMT1-206ENST00000579558 SLC25A22Q9H936 323 aa17.47■□□□□ 0.39
SHMT1-206ENST00000579558 RYR2Q92736 4967 aa17.47■□□□□ 0.39
SHMT1-206ENST00000579558 FNDC10F2Z333 226 aa17.46■□□□□ 0.39
SHMT1-206ENST00000579558 K7EPK0 472 aa17.46■□□□□ 0.39
SHMT1-206ENST00000579558 S100A7P31151 101 aa17.46■□□□□ 0.39
SHMT1-206ENST00000579558 TMEM41BQ5BJD5 291 aa17.46■□□□□ 0.39
SHMT1-206ENST00000579558 NPVFQ9HCQ7 196 aa17.46■□□□□ 0.39
SHMT1-206ENST00000579558 LCE6AA0A183 80 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 ZNF98A6NK75 572 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 GIG44P09565 113 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-206ENST00000579558 C4BPBP20851 252 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 ID1P41134 155 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 IFITM3Q01628 133 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 PMS2P11Q13670 270 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 GSG1LQ6UXU4 331 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 LINC00052Q96N35 136 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 SLC25A32Q9H2D1 315 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 BATF3Q9NR55 127 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 DOK5Q9P104 306 aa17.45■□□□□ 0.38
SHMT1-206ENST00000579558 TENM2Q9NT68 2774 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 CXorf65A6NEN9 183 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 ATF4P18848 351 aaPredicted RBP17.44■□□□□ 0.38
SHMT1-206ENST00000579558 GALR1P47211 349 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 PSMB3P49720 205 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 BCAP31P51572 246 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 SELENOTP62341 195 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 ARL16Q0P5N6 197 aa17.44■□□□□ 0.38
SHMT1-206ENST00000579558 SOCS3O14543 225 aa17.43■□□□□ 0.38
SHMT1-206ENST00000579558 LINC00869P0C866 280 aa17.43■□□□□ 0.38
SHMT1-206ENST00000579558 TEPPQ6URK8 271 aa17.43■□□□□ 0.38
SHMT1-206ENST00000579558 GPN1Q9HCN4 374 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-206ENST00000579558 H3BMM0 161 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 CAV2P51636 162 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 S100A10P60903 97 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 RAP2BP61225 183 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 SLC38A11Q08AI6 406 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 GGACTQ9BVM4 153 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 HIGD1AQ9Y241 93 aa17.42■□□□□ 0.38
SHMT1-206ENST00000579558 H3BRN7 92 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 ISLRO14498 428 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 HYPMO75409 117 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 DEDDO75618 318 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 HLA-DRB4P13762 266 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 PVALBP20472 110 aaPredicted RBP17.41■□□□□ 0.38
SHMT1-206ENST00000579558 MEOX2P50222 304 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 PLP1P60201 277 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 SAMD13Q5VXD3 122 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 GPR82Q96P67 336 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 RSG1Q9BU20 258 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 SCRT1Q9BWW7 348 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 SLC25A39Q9BZJ4 359 aaPredicted RBP17.41■□□□□ 0.38
SHMT1-206ENST00000579558 C11orf68Q9H3H3 251 aaKnown RBP17.41■□□□□ 0.38
SHMT1-206ENST00000579558 C11orf1Q9H5F2 150 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 CLEC5AQ9NY25 188 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 HLA-DRB4X5D2U9 266 aa17.41■□□□□ 0.38
SHMT1-206ENST00000579558 OR5G3P0C626 314 aa17.4■□□□□ 0.38
SHMT1-206ENST00000579558 DEFB1P60022 68 aa17.4■□□□□ 0.38
SHMT1-206ENST00000579558 NUTF2P61970 127 aaKnown RBP17.4■□□□□ 0.38
SHMT1-206ENST00000579558 NRARPQ7Z6K4 114 aa17.4■□□□□ 0.38
SHMT1-206ENST00000579558 C16orf92Q96LL3 132 aa17.4■□□□□ 0.38
SHMT1-206ENST00000579558 SHANK2-AS3Q9BTD1 123 aa17.4■□□□□ 0.38
SHMT1-206ENST00000579558 FAM24AA6NFZ4 105 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 JTBO76095 146 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 IL15RAQ13261 267 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 RAB32Q13637 225 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 GDF5OSQ5U4N7 250 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 FOXI2Q6ZQN5 318 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 ZNF546Q86UE3 836 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 ARL6Q9H0F7 186 aa17.39■□□□□ 0.37
SHMT1-206ENST00000579558 SAV1Q9H4B6 383 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-206ENST00000579558 NUPR2A6NF83 97 aa17.38■□□□□ 0.37
SHMT1-206ENST00000579558 GOSR2O14653 212 aa17.38■□□□□ 0.37
SHMT1-206ENST00000579558 DEFB4AO15263 64 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms